Variant report

Variant	rs12653862
Chromosome Location	chr5:147083017-147083018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10477342	0.92[EUR][1000 genomes]
rs11167996	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12659905	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13172946	1.00[AFR][1000 genomes]
rs1549912	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17495305	1.00[AFR][1000 genomes]
rs17495840	0.88[CEU][hapmap]
rs17496036	1.00[AFR][1000 genomes]
rs17496399	1.00[AFR][1000 genomes]
rs17496550	1.00[AFR][1000 genomes]
rs17497229	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17497858	0.92[EUR][1000 genomes]
rs17497914	0.89[EUR][1000 genomes]
rs17498180	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17561784	1.00[AFR][1000 genomes]
rs17562343	1.00[AFR][1000 genomes]
rs17563332	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17563872	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17624756	0.84[EUR][1000 genomes]
rs17703007	0.85[EUR][1000 genomes]
rs2053050	1.00[AFR][1000 genomes]
rs2053052	1.00[AFR][1000 genomes]
rs2116770	0.92[EUR][1000 genomes]
rs28469761	0.85[EUR][1000 genomes]
rs35130412	1.00[AFR][1000 genomes]
rs35285805	1.00[AFR][1000 genomes]
rs4593256	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4705042	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4705189	1.00[AFR][1000 genomes]
rs4705190	1.00[AFR][1000 genomes]
rs6895952	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71580441	1.00[AFR][1000 genomes]
rs72835149	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735973	0.85[EUR][1000 genomes]
rs9686888	0.85[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147078200-147084400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:147078600-147146000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:147079000-147085000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:147079600-147084000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:147079600-147084400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:147079600-147084800	Weak transcription	Brain Angular Gyrus	brain
7	chr5:147079600-147091600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:147079600-147101200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:147081800-147084400	Weak transcription	Brain Hippocampus Middle	brain
10	chr5:147081800-147084400	Weak transcription	Brain Substantia Nigra	brain

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