Variant report

Variant	rs17563332
Chromosome Location	chr5:147091646-147091647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10477342	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11167996	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12653862	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12659905	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13172946	1.00[AFR][1000 genomes]
rs1549912	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17495305	1.00[AFR][1000 genomes]
rs17495840	0.88[CEU][hapmap]
rs17496036	1.00[AFR][1000 genomes]
rs17496399	1.00[AFR][1000 genomes]
rs17496550	1.00[AFR][1000 genomes]
rs17497229	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17497858	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17497914	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17498180	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17561784	1.00[AFR][1000 genomes]
rs17562343	1.00[AFR][1000 genomes]
rs17563872	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17624756	0.84[EUR][1000 genomes]
rs17703007	0.86[EUR][1000 genomes]
rs2053050	1.00[AFR][1000 genomes]
rs2053052	1.00[AFR][1000 genomes]
rs2116770	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28469761	0.86[EUR][1000 genomes]
rs35130412	1.00[AFR][1000 genomes]
rs35285805	1.00[AFR][1000 genomes]
rs4593256	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4705042	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4705189	1.00[AFR][1000 genomes]
rs4705190	1.00[AFR][1000 genomes]
rs6895952	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71580441	1.00[AFR][1000 genomes]
rs72835149	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735973	0.86[EUR][1000 genomes]
rs9686888	0.86[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147078600-147146000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:147079600-147101200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:147085000-147093200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr5:147085600-147092800	Weak transcription	Brain Angular Gyrus	brain
5	chr5:147088800-147091800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:147088800-147092400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:147089800-147093200	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:147091200-147092400	Enhancers	Stomach Mucosa	stomach
9	chr5:147091400-147092200	Enhancers	Duodenum Mucosa	Duodenum
10	chr5:147091400-147093200	Weak transcription	Brain Anterior Caudate	brain
11	chr5:147091600-147091800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr5:147091600-147092000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:147091600-147092200	Enhancers	Primary hematopoietic stem cells	blood
14	chr5:147091600-147092200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr5:147091600-147092200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:147091600-147092200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:147091600-147092800	Enhancers	Brain Substantia Nigra	brain
18	chr5:147091600-147093200	Enhancers	Liver	Liver

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