Variant report

Variant	rs17107181
Chromosome Location	chr5:147064881-147064882
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13162740	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13172946	0.94[EUR][1000 genomes]
rs17107192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17495305	0.96[EUR][1000 genomes]
rs17495840	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17496036	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17496399	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17496550	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17561036	0.94[EUR][1000 genomes]
rs17561784	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17562343	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053050	0.94[EUR][1000 genomes]
rs2053052	0.94[EUR][1000 genomes]
rs35285805	0.96[EUR][1000 genomes]
rs4705189	0.96[EUR][1000 genomes]
rs4705190	0.97[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147042000-147076800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:147051400-147068200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:147051400-147070400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:147051400-147076600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:147051600-147066600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:147051600-147075600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:147051600-147077000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:147051600-147078400	Weak transcription	Primary T cells from cord blood	blood
9	chr5:147051800-147076800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:147054400-147065400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:147054600-147065400	Weak transcription	Brain Angular Gyrus	brain
12	chr5:147056400-147065400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:147060400-147072600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:147061000-147065600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:147062400-147065400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:147063400-147065400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr5:147063800-147068200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:147064000-147066200	Enhancers	Brain Anterior Caudate	brain
19	chr5:147064000-147071400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr5:147064200-147068400	Weak transcription	Fetal Brain Female	brain
21	chr5:147064400-147069600	Enhancers	Brain Substantia Nigra	brain
22	chr5:147064800-147065200	Weak transcription	Brain Hippocampus Middle	brain
23	chr5:147064800-147065800	Enhancers	Brain Germinal Matrix	brain

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