Variant report

Variant	rs11172145
Chromosome Location	chr12:57692612-57692613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11172139	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11172152	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11172161	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11172163	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11172166	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11172176	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11172184	0.86[AMR][1000 genomes]
rs34537746	0.87[AMR][1000 genomes]
rs35058761	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6581140	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7133915	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7139302	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7486863	0.80[AMR][1000 genomes]
rs7975026	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7975634	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57654800-57705400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:57662800-57706000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr12:57670400-57707000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr12:57670600-57693000	Strong transcription	Fetal Muscle Leg	muscle
5	chr12:57670600-57694400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr12:57670600-57698600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr12:57670600-57700000	Strong transcription	Fetal Muscle Trunk	muscle
8	chr12:57671000-57694400	Strong transcription	Adipose Nuclei	Adipose
9	chr12:57671000-57700000	Strong transcription	Liver	Liver
10	chr12:57674400-57697000	Strong transcription	Placenta	Placenta
11	chr12:57674600-57693200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr12:57674600-57693600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr12:57674600-57694200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:57674600-57697000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr12:57674600-57700000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:57674600-57702600	Weak transcription	HUVEC	blood vessel
17	chr12:57674600-57704400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr12:57674800-57693600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr12:57674800-57694200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr12:57674800-57697400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr12:57674800-57697800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:57674800-57700000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr12:57674800-57701000	Strong transcription	Primary T cells from cord blood	blood
24	chr12:57675000-57698400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr12:57675000-57699400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr12:57675000-57700000	Strong transcription	Fetal Thymus	thymus
27	chr12:57675000-57701000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr12:57675400-57707000	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr12:57675600-57694800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr12:57676200-57700000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr12:57676200-57700000	Strong transcription	Fetal Intestine Large	intestine
32	chr12:57677600-57713000	Weak transcription	Stomach Mucosa	stomach
33	chr12:57677800-57692800	Weak transcription	Pancreas	Pancrea
34	chr12:57678000-57693600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr12:57678000-57699400	Weak transcription	A549	lung
36	chr12:57678000-57713000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr12:57678200-57693600	Weak transcription	NHEK	skin
38	chr12:57679200-57696000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr12:57679200-57699800	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr12:57679400-57694400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr12:57679600-57694600	Strong transcription	HSMM	muscle
42	chr12:57680000-57698800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr12:57682400-57694400	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr12:57682400-57694600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr12:57682400-57696200	Strong transcription	Dnd41	blood
46	chr12:57682400-57700200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr12:57682600-57694200	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr12:57682800-57695000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr12:57682800-57695400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr12:57682800-57698600	Strong transcription	Duodenum Smooth Muscle	Duodenum

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