Variant report

Variant	rs11172152
Chromosome Location	chr12:57701868-57701869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:57701579..57702191-chr12:57849654..57850210,2	MCF-7	breast:
2	chr12:57701257..57702169-chr12:57855798..57856658,2	K562	blood:
3	chr12:57701019..57704000-chr12:57844441..57847045,2	MCF-7	breast:
4	chr12:57701335..57702913-chr12:57855295..57858132,2	K562	blood:
5	chr12:57701803..57704165-chr12:57704746..57706326,2	MCF-7	breast:
6	chr12:57700987..57702535-chr12:57846453..57847264,4	MCF-7	breast:
7	chr12:57701040..57702137-chr12:57846349..57847361,11	MCF-7	breast:
8	chr12:57700187..57703174-chr12:57848889..57851801,2	MCF-7	breast:
9	chr12:57701172..57702207-chr12:57846376..57847363,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000139269	Chromatin interaction
ENSG00000111087	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11172139	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11172145	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11172160	0.81[AMR][1000 genomes]
rs11172161	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11172163	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11172166	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11172176	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11172184	0.88[AMR][1000 genomes]
rs34537746	0.89[AMR][1000 genomes]
rs35032945	0.80[AMR][1000 genomes]
rs35058761	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6581140	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7133915	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7139302	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7975026	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7975634	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57654800-57705400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:57662800-57706000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr12:57670400-57707000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr12:57674600-57702600	Weak transcription	HUVEC	blood vessel
5	chr12:57674600-57704400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr12:57675400-57707000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:57677600-57713000	Weak transcription	Stomach Mucosa	stomach
8	chr12:57678000-57713000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:57689200-57703200	Weak transcription	Hela-S3	cervix
10	chr12:57689600-57703000	Weak transcription	HMEC	breast
11	chr12:57690400-57703200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr12:57690800-57702600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:57690800-57705400	Weak transcription	Spleen	Spleen
14	chr12:57691000-57736200	Weak transcription	Right Atrium	heart
15	chr12:57692000-57703000	Weak transcription	NH-A	brain
16	chr12:57693200-57705800	Weak transcription	K562	blood
17	chr12:57693600-57743800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr12:57693800-57702800	Weak transcription	NHLF	lung
19	chr12:57693800-57705200	Weak transcription	Small Intestine	intestine
20	chr12:57693800-57713000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr12:57694000-57702800	Weak transcription	Fetal Heart	heart
22	chr12:57694000-57703000	Weak transcription	Colon Smooth Muscle	Colon
23	chr12:57694000-57704600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr12:57694000-57705200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr12:57694000-57706200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr12:57694000-57709400	Weak transcription	Colonic Mucosa	Colon
27	chr12:57694000-57710000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr12:57694000-57713200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr12:57694000-57713200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr12:57694000-57780000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr12:57694200-57702600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr12:57694200-57703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr12:57694200-57734000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr12:57694400-57702400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr12:57694400-57702600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr12:57694400-57703000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr12:57694400-57703000	Weak transcription	NHDF-Ad	bronchial
38	chr12:57694400-57704000	Weak transcription	HepG2	liver
39	chr12:57694400-57704800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr12:57694400-57732400	Weak transcription	Ovary	ovary
41	chr12:57694400-57735000	Weak transcription	Psoas Muscle	Psoas
42	chr12:57694600-57702400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr12:57694600-57703000	Weak transcription	NHEK	skin
44	chr12:57694800-57702600	Weak transcription	Brain Angular Gyrus	brain
45	chr12:57695200-57794600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr12:57695800-57702600	Weak transcription	Brain Germinal Matrix	brain
47	chr12:57696000-57702400	Weak transcription	Brain Hippocampus Middle	brain
48	chr12:57696200-57703000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr12:57696800-57715200	Weak transcription	Gastric	stomach
50	chr12:57697000-57702600	Weak transcription	Osteobl	bone

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