Variant report

Variant	rs11172161
Chromosome Location	chr12:57712230-57712231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:57712029..57714648-chr12:57848397..57850555,2	K562	blood:

Variant related genes	Relation type
ENSG00000139269	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11172139	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11172145	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11172152	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11172163	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11172166	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11172176	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11172184	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11172197	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34453452	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34537746	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35032945	0.83[AMR][1000 genomes]
rs35058761	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6581140	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7139302	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7975026	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7975634	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57677600-57713000	Weak transcription	Stomach Mucosa	stomach
2	chr12:57678000-57713000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:57691000-57736200	Weak transcription	Right Atrium	heart
4	chr12:57693600-57743800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr12:57693800-57713000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:57694000-57713200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr12:57694000-57713200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr12:57694000-57780000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:57694200-57734000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr12:57694400-57732400	Weak transcription	Ovary	ovary
11	chr12:57694400-57735000	Weak transcription	Psoas Muscle	Psoas
12	chr12:57695200-57794600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr12:57696800-57715200	Weak transcription	Gastric	stomach
14	chr12:57697000-57726000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr12:57697000-57735400	Weak transcription	Right Ventricle	heart
16	chr12:57697200-57734000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:57697200-57745000	Weak transcription	Lung	lung
18	chr12:57697400-57713000	Weak transcription	Fetal Lung	lung
19	chr12:57697400-57721400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr12:57699800-57762400	Weak transcription	Left Ventricle	heart
21	chr12:57700000-57712600	Weak transcription	Fetal Muscle Leg	muscle
22	chr12:57700000-57717800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr12:57700000-57719800	Weak transcription	Fetal Kidney	kidney
24	chr12:57700000-57720000	Weak transcription	Fetal Intestine Large	intestine
25	chr12:57700000-57733800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr12:57700000-57736000	Weak transcription	Fetal Brain Male	brain
27	chr12:57700400-57721600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr12:57703200-57713000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr12:57703400-57733800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr12:57703400-57734600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr12:57703400-57742000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr12:57703600-57719000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr12:57703800-57713400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr12:57703800-57720200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr12:57703800-57723400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr12:57703800-57725000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr12:57703800-57726600	Weak transcription	Colon Smooth Muscle	Colon
38	chr12:57704000-57713000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr12:57704000-57713200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr12:57704000-57720600	Weak transcription	Placenta	Placenta
41	chr12:57704000-57726400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr12:57704200-57713200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr12:57704200-57718400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr12:57704200-57718800	Weak transcription	Primary T cells from cord blood	blood
45	chr12:57704200-57719000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr12:57704200-57720000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr12:57704200-57721200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr12:57704200-57721600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr12:57704200-57725400	Weak transcription	Thymus	Thymus
50	chr12:57704200-57728200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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