Variant report

Variant	rs7139302
Chromosome Location	chr12:57703935-57703936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:57701019..57704000-chr12:57844441..57847045,2	MCF-7	breast:
2	chr12:57702958..57705932-chr12:57847921..57850927,4	K562	blood:
3	chr12:57701803..57704165-chr12:57704746..57706326,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139269	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11172139	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11172145	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11172152	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11172161	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11172163	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11172166	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11172176	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11172184	0.87[AMR][1000 genomes]
rs34537746	0.88[AMR][1000 genomes]
rs35058761	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6581140	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7133915	0.86[EUR][1000 genomes]
rs7975026	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7975634	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57654800-57705400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:57662800-57706000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr12:57670400-57707000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr12:57674600-57704400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr12:57675400-57707000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr12:57677600-57713000	Weak transcription	Stomach Mucosa	stomach
7	chr12:57678000-57713000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:57690800-57705400	Weak transcription	Spleen	Spleen
9	chr12:57691000-57736200	Weak transcription	Right Atrium	heart
10	chr12:57693200-57705800	Weak transcription	K562	blood
11	chr12:57693600-57743800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr12:57693800-57705200	Weak transcription	Small Intestine	intestine
13	chr12:57693800-57713000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:57694000-57704600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr12:57694000-57705200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr12:57694000-57706200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr12:57694000-57709400	Weak transcription	Colonic Mucosa	Colon
18	chr12:57694000-57710000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr12:57694000-57713200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr12:57694000-57713200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr12:57694000-57780000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:57694200-57734000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr12:57694400-57704000	Weak transcription	HepG2	liver
24	chr12:57694400-57704800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr12:57694400-57732400	Weak transcription	Ovary	ovary
26	chr12:57694400-57735000	Weak transcription	Psoas Muscle	Psoas
27	chr12:57695200-57794600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr12:57696800-57715200	Weak transcription	Gastric	stomach
29	chr12:57697000-57705600	Weak transcription	Pancreas	Pancrea
30	chr12:57697000-57726000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr12:57697000-57735400	Weak transcription	Right Ventricle	heart
32	chr12:57697200-57707200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr12:57697200-57734000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:57697200-57745000	Weak transcription	Lung	lung
35	chr12:57697400-57713000	Weak transcription	Fetal Lung	lung
36	chr12:57697400-57721400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr12:57698400-57705600	Weak transcription	Esophagus	oesophagus
38	chr12:57698600-57705200	Weak transcription	GM12878-XiMat	blood
39	chr12:57699800-57762400	Weak transcription	Left Ventricle	heart
40	chr12:57700000-57704400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr12:57700000-57712600	Weak transcription	Fetal Muscle Leg	muscle
42	chr12:57700000-57717800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr12:57700000-57719800	Weak transcription	Fetal Kidney	kidney
44	chr12:57700000-57720000	Weak transcription	Fetal Intestine Large	intestine
45	chr12:57700000-57733800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr12:57700000-57736000	Weak transcription	Fetal Brain Male	brain
47	chr12:57700200-57709800	Weak transcription	Fetal Brain Female	brain
48	chr12:57700400-57704000	Strong transcription	Fetal Intestine Small	intestine
49	chr12:57700400-57721600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr12:57701400-57704000	Strong transcription	Fetal Stomach	stomach

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