Variant report
| Variant | rs11174249 |
|---|---|
| Chromosome Location | chr12:62344536-62344537 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:62343252..62345327-chr12:62346019..62348550,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs12300578 | 0.92[YRI][hapmap] |
| rs12307540 | 0.92[ASW][hapmap];0.95[LWK][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs1371922 | 0.92[YRI][hapmap] |
| rs1920706 | 0.89[CEU][hapmap];0.94[TSI][hapmap] |
| rs2582335 | 0.89[CEU][hapmap];0.88[TSI][hapmap] |
| rs349875 | 0.84[EUR][1000 genomes] |
| rs349885 | 0.89[CEU][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs6581435 | 0.92[ASW][hapmap];0.95[LWK][hapmap];0.84[MKK][hapmap];0.84[YRI][hapmap] |
| rs7977306 | 0.92[ASW][hapmap];0.90[LWK][hapmap];0.84[MKK][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039741 | chr12:62046850-62491052 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11174249 | ZBTB39 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
