Variant report

Variant	rs1920706
Chromosome Location	chr12:62354369-62354370
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11174249	0.89[CEU][hapmap];0.94[TSI][hapmap]
rs2582333	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.92[MKK][hapmap];0.88[YRI][hapmap]
rs2582335	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs2701154	0.83[YRI][hapmap]
rs349873	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.97[MKK][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs349875	0.83[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs349883	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs349884	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs349885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs349887	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap]
rs349888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs699558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs851903	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs851905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs851906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs851908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs851909	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs851910	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs851911	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.94[MKK][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs851914	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs969173	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1920706	CNPY2	cis	cerebellum	SCAN
rs1920706	NXPH4	cis	cerebellum	SCAN
rs1920706	ZBTB39	cis	parietal	SCAN
rs1920706	KIF5A	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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