Variant report

Variant	rs349875
Chromosome Location	chr12:62343130-62343131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1920706	0.83[YRI][hapmap]
rs2582335	0.82[YRI][hapmap]
rs349873	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs349883	1.00[ASN][1000 genomes]
rs349884	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs349885	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851905	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs851909	1.00[ASN][1000 genomes]
rs851910	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs851911	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs851914	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62343000-62343200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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