Variant report

Variant	rs851910
Chromosome Location	chr12:62334088-62334089
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1920706	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2582333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2582335	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2701154	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs349873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349875	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs349883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs349884	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs349885	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs349887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs349888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs699558	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7134824	1.00[CEU][hapmap]
rs851903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs851905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs851906	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs851908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs851909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62333200-62334600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr12:62333400-62334400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr12:62333400-62334600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:62333400-62334600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:62333400-62334800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:62333600-62334600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr12:62333600-62334800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr12:62333800-62334600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:62334000-62334600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr12:62334000-62334600	Enhancers	HUES48 Cell Line	embryonic stem cell

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