Variant report
| Variant | rs6581435 |
|---|---|
| Chromosome Location | chr12:62330468-62330469 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11174243 | 1.00[EUR][1000 genomes] |
| rs11174248 | 1.00[EUR][1000 genomes] |
| rs11174249 | 0.92[ASW][hapmap];0.95[LWK][hapmap];0.84[MKK][hapmap];0.84[YRI][hapmap] |
| rs12300578 | 0.92[YRI][hapmap] |
| rs12305044 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12306906 | 1.00[EUR][1000 genomes] |
| rs12307540 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12309121 | 1.00[EUR][1000 genomes] |
| rs12309224 | 0.89[AMR][1000 genomes] |
| rs12320150 | 1.00[EUR][1000 genomes] |
| rs1371922 | 0.92[YRI][hapmap] |
| rs3847912 | 1.00[EUR][1000 genomes] |
| rs58600898 | 1.00[EUR][1000 genomes] |
| rs73310271 | 1.00[EUR][1000 genomes] |
| rs73310273 | 1.00[EUR][1000 genomes] |
| rs74096113 | 1.00[EUR][1000 genomes] |
| rs7962524 | 1.00[EUR][1000 genomes] |
| rs7964628 | 1.00[EUR][1000 genomes] |
| rs7977306 | 1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039741 | chr12:62046850-62491052 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
