Variant report

Variant	rs11176707
Chromosome Location	chr12:67771468-67771469
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:67770801..67773357-chr12:67773424..67775870,2	MCF-7	breast:
2	chr12:67770479..67771511-chr12:67808551..67809878,6	MCF-7	breast:
3	chr12:67757297..67760146-chr12:67769461..67771948,2	MCF-7	breast:
4	chr12:67662227..67664499-chr12:67769883..67772706,3	MCF-7	breast:
5	chr12:67768983..67772429-chr12:67779046..67781779,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111530	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10878598	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176668	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11176669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11176670	0.95[ASN][1000 genomes]
rs11176673	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11176686	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176689	1.00[ASN][1000 genomes]
rs11176703	1.00[ASN][1000 genomes]
rs11176704	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11176705	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11176711	0.95[ASN][1000 genomes]
rs12302564	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12305377	1.00[ASN][1000 genomes]
rs12306657	1.00[ASN][1000 genomes]
rs12311150	0.95[ASN][1000 genomes]
rs12314146	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3087577	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3736630	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55646172	0.95[ASN][1000 genomes]
rs55809526	0.95[ASN][1000 genomes]
rs55809587	0.95[ASN][1000 genomes]
rs55906716	0.95[ASN][1000 genomes]
rs55978724	0.95[ASN][1000 genomes]
rs56224819	0.95[ASN][1000 genomes]
rs56728872	0.95[ASN][1000 genomes]
rs58114937	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60009568	1.00[ASN][1000 genomes]
rs60072946	0.95[ASN][1000 genomes]
rs60077199	1.00[ASN][1000 genomes]
rs60104343	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60971316	1.00[ASN][1000 genomes]
rs61195985	0.95[ASN][1000 genomes]
rs61219299	1.00[ASN][1000 genomes]
rs61281993	1.00[ASN][1000 genomes]
rs7137520	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7296364	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7298244	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7307353	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7312708	0.95[ASN][1000 genomes]
rs7954050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7976686	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7978989	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67762000-67780600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:67770400-67772200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:67770600-67772400	Enhancers	NHEK	skin
4	chr12:67770800-67771600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:67770800-67771800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:67770800-67771800	Enhancers	HMEC	breast
7	chr12:67771000-67771600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:67771200-67771600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:67771200-67771600	Enhancers	HSMMtube	muscle
10	chr12:67771200-67774200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:67771400-67771800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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