Variant report

Variant	rs11176711
Chromosome Location	chr12:67782745-67782746
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67781872..67782796-chr12:67809160..67809822,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10878598	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11176668	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11176669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11176670	0.91[ASN][1000 genomes]
rs11176673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11176686	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11176689	0.95[ASN][1000 genomes]
rs11176703	0.95[ASN][1000 genomes]
rs11176704	0.95[ASN][1000 genomes]
rs11176705	0.95[ASN][1000 genomes]
rs11176707	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12302564	0.95[ASN][1000 genomes]
rs12305377	0.95[ASN][1000 genomes]
rs12306657	0.95[ASN][1000 genomes]
rs12311150	1.00[ASN][1000 genomes]
rs12314146	0.95[ASN][1000 genomes]
rs3087577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3736630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs55646172	0.91[ASN][1000 genomes]
rs55809526	0.91[ASN][1000 genomes]
rs55809587	0.91[ASN][1000 genomes]
rs55906716	0.91[ASN][1000 genomes]
rs55978724	0.91[ASN][1000 genomes]
rs56224819	0.91[ASN][1000 genomes]
rs56728872	0.91[ASN][1000 genomes]
rs58114937	0.91[ASN][1000 genomes]
rs60009568	0.95[ASN][1000 genomes]
rs60072946	0.91[ASN][1000 genomes]
rs60077199	0.95[ASN][1000 genomes]
rs60104343	0.86[ASN][1000 genomes]
rs60971316	0.95[ASN][1000 genomes]
rs61195985	0.91[ASN][1000 genomes]
rs61219299	0.95[ASN][1000 genomes]
rs61281993	0.95[ASN][1000 genomes]
rs7137520	0.93[ASN][1000 genomes]
rs7296364	0.91[ASN][1000 genomes]
rs7298244	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7307353	0.91[ASN][1000 genomes]
rs7312708	1.00[ASN][1000 genomes]
rs7954050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7976686	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7978989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67781400-67783400	Enhancers	Fetal Thymus	thymus
2	chr12:67781400-67784400	Enhancers	Fetal Muscle Leg	muscle
3	chr12:67781600-67784200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr12:67781800-67783400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:67781800-67783400	Enhancers	Dnd41	blood
6	chr12:67781800-67784200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:67782000-67783200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr12:67782000-67783200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr12:67782200-67782800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr12:67782200-67782800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:67782200-67782800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr12:67782200-67782800	Enhancers	Fetal Intestine Large	intestine
13	chr12:67782200-67783000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:67782200-67783000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr12:67782200-67783000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr12:67782200-67783000	Enhancers	Fetal Intestine Small	intestine
17	chr12:67782200-67783000	Enhancers	Psoas Muscle	Psoas
18	chr12:67782200-67783000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr12:67782200-67783000	Enhancers	HSMMtube	muscle
20	chr12:67782200-67783200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr12:67782200-67783400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr12:67782400-67782800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr12:67782400-67782800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr12:67782400-67782800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr12:67782400-67782800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr12:67782400-67782800	Enhancers	HSMM	muscle
27	chr12:67782400-67783000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr12:67782400-67783000	Enhancers	Thymus	Thymus
29	chr12:67782400-67783000	Enhancers	NHEK	skin
30	chr12:67782400-67783200	Enhancers	Fetal Kidney	kidney
31	chr12:67782400-67783400	Enhancers	Primary hematopoietic stem cells	blood
32	chr12:67782400-67783800	Enhancers	Fetal Muscle Trunk	muscle
33	chr12:67782600-67783000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr12:67782600-67783000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr12:67782600-67783600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr12:67782600-67784000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr12:67782600-67788400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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