Variant report

Variant	rs11185775
Chromosome Location	chr10:91352296-91352297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11185765	1.00[EUR][1000 genomes]
rs11185776	1.00[EUR][1000 genomes]
rs11185781	1.00[EUR][1000 genomes]
rs11185782	1.00[EUR][1000 genomes]
rs11816406	1.00[EUR][1000 genomes]
rs12249756	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255705	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13376985	1.00[EUR][1000 genomes]
rs1475760	1.00[EUR][1000 genomes]
rs60233299	1.00[EUR][1000 genomes]
rs7093503	1.00[EUR][1000 genomes]
rs74146983	1.00[EUR][1000 genomes]
rs7893438	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
2	chr10:91335400-91370800	Weak transcription	A549	lung
3	chr10:91335400-91375600	Weak transcription	NH-A	brain
4	chr10:91340200-91352400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:91340600-91352400	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:91343200-91352600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
8	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
9	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
11	chr10:91346400-91357800	Weak transcription	Fetal Kidney	kidney
12	chr10:91346400-91358000	Weak transcription	Fetal Brain Female	brain
13	chr10:91346600-91352400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:91346600-91352400	Weak transcription	Brain Germinal Matrix	brain
15	chr10:91346600-91352600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:91347000-91359200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:91347800-91352400	Weak transcription	HMEC	breast
18	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr10:91348800-91352400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:91348800-91358000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:91349200-91352400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:91349200-91353400	Enhancers	Fetal Heart	heart
23	chr10:91349200-91367600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:91349400-91352400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:91349400-91357600	Weak transcription	HSMMtube	muscle
26	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:91350200-91352400	Enhancers	Fetal Intestine Large	intestine
28	chr10:91350200-91353800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:91350200-91359800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:91350400-91354600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:91350600-91353800	Strong transcription	Dnd41	blood
32	chr10:91350600-91354200	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr10:91350600-91355000	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:91350800-91352400	Weak transcription	Brain Hippocampus Middle	brain
35	chr10:91350800-91363200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr10:91351000-91352600	Weak transcription	Fetal Thymus	thymus
37	chr10:91351000-91352600	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr10:91351000-91353800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:91351000-91360800	Weak transcription	Thymus	Thymus
40	chr10:91351000-91371200	Weak transcription	Brain Anterior Caudate	brain
41	chr10:91351200-91352600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:91351200-91352600	Enhancers	Ovary	ovary
43	chr10:91351200-91353600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:91351200-91353600	Strong transcription	GM12878-XiMat	blood
45	chr10:91351200-91353600	Strong transcription	NHEK	skin
46	chr10:91351200-91353800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:91351200-91353800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:91351200-91354200	Strong transcription	Primary T cells from cord blood	blood
49	chr10:91351200-91355000	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:91351400-91352400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links