Variant report

Variant	rs60233299
Chromosome Location	chr10:91276480-91276481
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91174356..91176004-chr10:91276224..91278502,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152778	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11185765	1.00[EUR][1000 genomes]
rs11185775	1.00[EUR][1000 genomes]
rs11185776	1.00[EUR][1000 genomes]
rs11185781	1.00[EUR][1000 genomes]
rs11185782	1.00[EUR][1000 genomes]
rs11816406	1.00[EUR][1000 genomes]
rs12249756	1.00[EUR][1000 genomes]
rs12255705	1.00[EUR][1000 genomes]
rs13376985	1.00[EUR][1000 genomes]
rs1475760	1.00[EUR][1000 genomes]
rs7093503	1.00[EUR][1000 genomes]
rs74146983	1.00[EUR][1000 genomes]
rs7893438	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91264800-91277800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:91274400-91276800	Weak transcription	Left Ventricle	heart
3	chr10:91274800-91276600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:91274800-91276600	Enhancers	Fetal Stomach	stomach
5	chr10:91274800-91276600	Enhancers	HMEC	breast
6	chr10:91275000-91276600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:91275000-91276600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:91275000-91276800	Enhancers	Colon Smooth Muscle	Colon
9	chr10:91275200-91276600	Enhancers	Rectal Smooth Muscle	rectum
10	chr10:91275200-91276600	Enhancers	Hela-S3	cervix
11	chr10:91275200-91277800	Weak transcription	Aorta	Aorta
12	chr10:91275400-91276600	Enhancers	Liver	Liver
13	chr10:91275400-91276600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr10:91275600-91276600	Enhancers	A549	lung
15	chr10:91275600-91278000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:91275600-91279400	Enhancers	HSMM	muscle
17	chr10:91275800-91276600	Enhancers	NHLF	lung
18	chr10:91275800-91276800	Enhancers	NHDF-Ad	bronchial
19	chr10:91276000-91276600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:91276000-91276600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:91276000-91276600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:91276000-91276600	Enhancers	NHEK	skin
23	chr10:91276000-91276800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:91276000-91276800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:91276000-91277000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr10:91276000-91277000	Enhancers	Osteobl	bone
27	chr10:91276000-91277800	Weak transcription	Right Ventricle	heart
28	chr10:91276000-91278800	Enhancers	Pancreas	Pancrea
29	chr10:91276000-91281200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:91276200-91276600	Flanking Active TSS	Fetal Heart	heart
31	chr10:91276200-91276600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr10:91276200-91276600	Enhancers	Stomach Smooth Muscle	stomach
33	chr10:91276200-91276600	Flanking Active TSS	NH-A	brain
34	chr10:91276200-91276800	Weak transcription	Right Atrium	heart
35	chr10:91276200-91277800	Weak transcription	Psoas Muscle	Psoas
36	chr10:91276200-91277800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:91276200-91281000	Weak transcription	Fetal Lung	lung
38	chr10:91276400-91276600	Enhancers	HSMMtube	muscle
39	chr10:91276400-91277200	Weak transcription	Fetal Muscle Leg	muscle
40	chr10:91276400-91277600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:91276400-91277800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:91276400-91280200	Weak transcription	Fetal Intestine Small	intestine
43	chr10:91276400-91285600	Weak transcription	Fetal Intestine Large	intestine

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