Variant report

Variant	rs11816406
Chromosome Location	chr10:91347298-91347299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91346501..91348407-chr10:91350515..91353203,2	K562	blood:

Variant related genes	Relation type
ENSG00000198997	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11185765	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11185775	1.00[EUR][1000 genomes]
rs11185776	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11185781	1.00[EUR][1000 genomes]
rs11185782	1.00[EUR][1000 genomes]
rs12249756	1.00[EUR][1000 genomes]
rs12255705	1.00[EUR][1000 genomes]
rs13376985	1.00[EUR][1000 genomes]
rs1475760	1.00[EUR][1000 genomes]
rs60233299	1.00[EUR][1000 genomes]
rs7093503	1.00[EUR][1000 genomes]
rs74146983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7893438	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91333400-91348400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:91333400-91351200	Weak transcription	Ovary	ovary
3	chr10:91334400-91351000	Weak transcription	NHLF	lung
4	chr10:91334400-91351200	Weak transcription	Fetal Stomach	stomach
5	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
6	chr10:91335200-91347800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:91335200-91352200	Weak transcription	NHDF-Ad	bronchial
8	chr10:91335400-91347600	Weak transcription	Osteobl	bone
9	chr10:91335400-91370800	Weak transcription	A549	lung
10	chr10:91335400-91375600	Weak transcription	NH-A	brain
11	chr10:91335600-91348400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:91336600-91347800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:91337400-91348000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:91338000-91347800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:91339000-91351600	Weak transcription	Aorta	Aorta
16	chr10:91340000-91351200	Weak transcription	Placenta	Placenta
17	chr10:91340200-91352400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:91340600-91352400	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:91340800-91347800	Weak transcription	Fetal Intestine Large	intestine
20	chr10:91341000-91349000	Weak transcription	Psoas Muscle	Psoas
21	chr10:91341600-91348200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:91342200-91348600	Strong transcription	Liver	Liver
23	chr10:91342200-91349200	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:91342200-91352000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:91342400-91352200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:91342600-91349400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:91342800-91347600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:91343000-91347800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:91343000-91348600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:91343200-91348800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:91343200-91352600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
33	chr10:91343400-91348200	Weak transcription	HSMMtube	muscle
34	chr10:91343400-91349000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
36	chr10:91343600-91347600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr10:91343600-91348400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:91343600-91351200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:91344000-91351200	Weak transcription	Primary T cells from cord blood	blood
40	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:91344200-91351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:91344400-91348400	Weak transcription	HUVEC	blood vessel
43	chr10:91344400-91351200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:91344400-91351400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:91344800-91348400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:91344800-91352000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
48	chr10:91345200-91348800	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr10:91345400-91347800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:91345400-91347800	Weak transcription	Monocytes-CD14+_RO01746	blood

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