Variant report

Variant	rs11186642
Chromosome Location	chr10:93403068-93403069
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93316526..93318307-chr10:93400895..93403108,2	MCF-7	breast:
2	chr10:93387981..93389630-chr10:93402010..93403622,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10881933	1.00[ASN][1000 genomes]
rs11186636	0.81[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186644	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186645	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186653	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186656	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354682	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356678	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359574	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341992	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4382814	0.87[YRI][hapmap]
rs4933680	0.81[CEU][hapmap];0.82[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58528906	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60729272	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149295	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93393400-93403600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93401600-93403400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:93401600-93404800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:93401800-93404800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:93402000-93404800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:93402200-93403600	Enhancers	HSMM	muscle
7	chr10:93402200-93403600	Enhancers	NHDF-Ad	bronchial
8	chr10:93402200-93403800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:93402200-93404000	Enhancers	HMEC	breast
10	chr10:93402400-93403400	Weak transcription	Aorta	Aorta
11	chr10:93402400-93403600	Enhancers	NHEK	skin
12	chr10:93402400-93403800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:93402400-93404000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:93402400-93404000	Enhancers	Osteobl	bone
15	chr10:93402600-93404000	Enhancers	NHLF	lung
16	chr10:93402800-93403600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:93402800-93403600	Enhancers	Liver	Liver
18	chr10:93402800-93404000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:93402800-93404000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:93402800-93404800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:93403000-93403200	Flanking Active TSS	A549	lung
22	chr10:93403000-93404800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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