Variant report

Variant	rs4933680
Chromosome Location	chr10:93395236-93395237
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:93395199-93395487	HUVEC	blood vessel:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
2	RAD21	chr10:93395168-93395564	SK-N-SH_RA	brain:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351
3	CTCF	chr10:93395171-93395437	K562	blood:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
4	RAD21	chr10:93395186-93395415	K562	blood:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351
5	CTCF	chr10:93395215-93395474	K562	blood:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
6	CTCF	chr10:93395155-93395501	HepG2	liver:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
7	MYC	chr10:93395108-93395512	K562	blood:	n/a	n/a
8	CTCF	chr10:93395173-93395518	K562	blood:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
9	CTCF	chr10:93395211-93395472	GM12878	blood:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
10	RAD21	chr10:93395020-93395616	MCF-7	breast:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351
11	ZNF143	chr10:93395216-93395520	H1-hESC	embryonic stem cell:	n/a	n/a
12	CTCF	chr10:93394775-93395939	A549	lung:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
13	RCOR1	chr10:93395189-93395485	K562	blood:	n/a	n/a
14	RAD21	chr10:93395022-93395639	MCF-7	breast:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351
15	CTCF	chr10:93395200-93395350	HCM	heart:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395336-93395349
16	BHLHE40	chr10:93395204-93395470	A549	lung:	n/a	n/a
17	CTCF	chr10:93395160-93395547	MCF-7	breast:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
18	CTCF	chr10:93395144-93395472	H1-hESC	embryonic stem cell:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
19	CTCF	chr10:93394979-93395693	HCT-116	colon:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
20	YY1	chr10:93395213-93395464	HCT-116	colon:	n/a	n/a
21	YY1	chr10:93395196-93395390	GM12878	blood:	n/a	n/a
22	CTCF	chr10:93395137-93395497	ECC-1	luminal epithelium:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
23	EBF1	chr10:93395207-93395449	GM12878	blood:	n/a	n/a
24	CTCF	chr10:93395211-93395458	NHEK	skin:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
25	CTCF	chr10:93395220-93395370	HRE	kidney:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
26	CTCF	chr10:93395013-93395613	MCF-7	breast:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
27	MAX	chr10:93394981-93395561	HepG2	liver:	n/a	n/a
28	MYC	chr10:93395168-93395478	NB4	blood:	n/a	n/a
29	RAD21	chr10:93395146-93395526	H1-hESC	embryonic stem cell:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351
30	FOS	chr10:93395201-93395401	MCF10A-Er-Src	breast:	n/a	n/a
31	CTCF	chr10:93395135-93395529	H1-hESC	embryonic stem cell:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
32	MYC	chr10:93395129-93395521	MCF10A-Er-Src	breast:	n/a	n/a
33	CTCF	chr10:93395013-93395626	HCT-116	colon:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
34	SMC3	chr10:93395145-93395764	HepG2	liver:	n/a	chr10:93395336-93395346 chr10:93395336-93395350
35	RAD21	chr10:93395142-93395543	GM12878	blood:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351
36	PRDM1	chr10:93395126-93395642	Hela-S3	cervix:	n/a	chr10:93395367-93395382 chr10:93395369-93395378 chr10:93395368-93395382
37	CTCF	chr10:93395221-93395475	Pancreas_OC	pancreas:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
38	RAD21	chr10:93395065-93395623	IMR90	lung:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351
39	RAD21	chr10:93394953-93395649	A549	lung:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351
40	ARID3A	chr10:93395139-93395482	HepG2	liver:	n/a	n/a
41	BHLHE40	chr10:93395120-93395569	K562	blood:	n/a	n/a
42	IRF1	chr10:93395194-93395577	K562	blood:	n/a	chr10:93395475-93395485
43	MAX	chr10:93395135-93395530	Hela-S3	cervix:	n/a	n/a
44	CTCF	chr10:93395215-93395478	Spleen_OC	spleen:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
45	MAX	chr10:93395199-93395470	NB4	blood:	n/a	n/a
46	CTCF	chr10:93395156-93395470	SK-N-SH_RA	brain:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
47	RAD21	chr10:93394988-93395773	HCT-116	colon:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351
48	RAD21	chr10:93394990-93395690	HepG2	liver:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351
49	RAD21	chr10:93394944-93395657	Hela-S3	cervix:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351
50	SMC3	chr10:93395125-93395537	K562	blood:	n/a	chr10:93395336-93395346 chr10:93395336-93395350

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:93395235-93395285	MCF-7	breast:	n/a
2	chr10:93395235-93395285	HL-60	blood:	n/a
3	chr10:93395235-93395285	AG09309	skin:	n/a
4	chr10:93395235-93395285	HCPEpiC	choroid plexus:	n/a
5	chr10:93395235-93395285	BJ	skin:	n/a
6	chr10:93395235-93395285	SK-N-SH	brain:	n/a
7	chr10:93395235-93395285	HCF	heart:	n/a
8	chr10:93395235-93395285	HCT-116	colon:	n/a
9	chr10:93395235-93395285	PANC-1	pancreas:	n/a
10	chr10:93395235-93395285	U87	brain:	n/a
11	chr10:93395235-93395285	AG04449	skin:	fetal
12	chr10:93395235-93395285	MCF10A-Er-Src	breast:	n/a
13	chr10:93395235-93395285	SK-N-MC	brain:	n/a
14	chr10:93395235-93395285	SKMC	muscle:	n/a
15	chr10:93395235-93395285	GM06990	blood:	n/a
16	chr10:93395235-93395285	Hepatocyte	liver:	n/a
17	chr10:93395235-93395285	ECC-1	luminal epithelium:	n/a
18	chr10:93395235-93395285	Caco-2	colon:	n/a
19	chr10:93395235-93395285	Jurkat	blood:	n/a
20	chr10:93395235-93395285	NH-A	brain:	n/a
21	chr10:93395235-93395285	BE2_C	brain:	n/a
22	chr10:93395235-93395285	NHDF-neo	bronchial:	n/a
23	chr10:93395235-93395285	T-47D	breast:	n/a
24	chr10:93395235-93395285	AG10803	skin:	n/a
25	chr10:93395235-93395285	PFSK-1	brain:	n/a
26	chr10:93395235-93395285	A549	lung:	n/a
27	chr10:93395235-93395285	HEEpiC	esophagus:	n/a
28	chr10:93395235-93395285	HepG2	liver:	n/a
29	chr10:93395235-93395285	AG09319	gingival:	n/a
30	chr10:93395235-93395285	HRPEpiC	eye:	n/a
31	chr10:93395235-93395285	HCM	heart:	n/a
32	chr10:93395235-93395285	HIPEpiC	eye:	n/a
33	chr10:93395235-93395285	K562	blood:	n/a
34	chr10:93395235-93395285	NT2-D1	testis:	n/a
35	chr10:93395235-93395285	LNCaP	prostate:	n/a
36	chr10:93395235-93395285	H1-hESC	embryonic stem cell:	embryo
37	chr10:93395235-93395285	GM12892	blood:	n/a
38	chr10:93395235-93395285	AG04450	lung:	fetal
39	chr10:93395235-93395285	HRE	kidney:	n/a
40	chr10:93395235-93395285	AoSMC	blood vessel:	n/a
41	chr10:93395235-93395285	RPTEC	kidney:	n/a
42	chr10:93395235-93395285	NB4	blood:	n/a
43	chr10:93395235-93395285	NHBE	bronchial:	n/a
44	chr10:93395235-93395285	CMK	blood:	n/a
45	chr10:93395235-93395285	SK-N-SH_RA	brain:	n/a
46	chr10:93395235-93395285	GM19239	blood:	n/a
47	chr10:93395235-93395285	HEK293	kidney:	embryo
48	chr10:93395235-93395285	HRCEpiC	kidney:	n/a
49	chr10:93395235-93395285	HPAEpiC	pulmonary alveolar:	n/a
50	chr10:93395235-93395285	IMR90	lung:	fetal

No.	Distal block	Cell Line	Cell type
1	chr10:93057753..93058270-chr10:93394920..93395806,2	MCF-7	breast:
2	chr10:93387435..93390652-chr10:93392972..93396624,3	K562	blood:
3	chr10:93313759..93314410-chr10:93394913..93395726,2	MCF-7	breast:
4	chr10:93168171..93171020-chr10:93393075..93396525,3	K562	blood:
5	chr10:30030808..30031790-chr10:93394836..93395663,2	MCF-7	breast:
6	chr10:93252757..93253678-chr10:93394838..93395687,3	K562	blood:
7	chr10:93311259..93312202-chr10:93394865..93395816,4	K562	blood:
8	chr10:93311257..93312872-chr10:93394985..93396104,5	MCF-7	breast:
9	chr10:93311362..93313128-chr10:93394763..93396863,21	MCF-7	breast:
10	chr10:93343830..93345636-chr10:93394100..93396852,2	K562	blood:
11	chr10:93386300..93388872-chr10:93393581..93396543,2	MCF-7	breast:

Variant related genes	Relation type
PPP1R3C	TF binding region
PPP1R3C	CpG island
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10881933	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186636	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186642	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186644	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186645	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186653	0.80[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186656	1.00[ASN][1000 genomes]
rs12354682	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356678	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359574	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341992	1.00[ASN][1000 genomes]
rs1418163	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4382814	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs58528906	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60729272	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149295	1.00[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93393400-93395600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:93393400-93403600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:93393600-93395400	Weak transcription	Brain Germinal Matrix	brain
4	chr10:93393600-93395400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:93393600-93395400	Weak transcription	Fetal Intestine Large	intestine
6	chr10:93393600-93395400	Weak transcription	Right Atrium	heart
7	chr10:93393600-93396000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:93393600-93396000	Enhancers	Hela-S3	cervix
9	chr10:93393600-93397200	Enhancers	Liver	Liver
10	chr10:93393600-93402800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:93393800-93395400	Weak transcription	Brain Anterior Caudate	brain
12	chr10:93393800-93395400	Weak transcription	HSMM	muscle
13	chr10:93393800-93395600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:93393800-93396000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:93393800-93396000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:93394000-93395400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:93394000-93396800	Enhancers	Fetal Heart	heart
18	chr10:93394200-93395400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:93394200-93395800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:93394200-93396000	Enhancers	NHDF-Ad	bronchial
21	chr10:93394400-93395400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:93394400-93395600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:93394400-93395600	Enhancers	Stomach Smooth Muscle	stomach
24	chr10:93394800-93395600	Enhancers	Brain Substantia Nigra	brain
25	chr10:93394800-93395800	Enhancers	NH-A	brain
26	chr10:93394800-93396000	Enhancers	HepG2	liver
27	chr10:93394800-93396400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:93394800-93396800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:93395000-93395400	Enhancers	Fetal Kidney	kidney
30	chr10:93395000-93395600	Enhancers	Adipose Nuclei	Adipose
31	chr10:93395000-93395600	Weak transcription	Aorta	Aorta
32	chr10:93395000-93395800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:93395000-93395800	Enhancers	HMEC	breast
34	chr10:93395000-93396000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:93395000-93396000	Enhancers	NHEK	skin
36	chr10:93395000-93396000	Enhancers	Osteobl	bone
37	chr10:93395000-93396400	Enhancers	NHLF	lung
38	chr10:93395200-93395600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:93395200-93395600	Enhancers	Fetal Lung	lung
40	chr10:93395200-93395800	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr10:93395200-93396000	Enhancers	Fetal Stomach	stomach
42	chr10:93395200-93396000	Enhancers	A549	lung
43	chr10:93395200-93396800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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