Variant report

Variant	rs11188259
Chromosome Location	chr10:97044211-97044212
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97038716..97042709-chr10:97043945..97047071,5	K562	blood:
2	chr10:97043065..97046149-chr10:97046526..97051165,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10882577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11188257	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188262	0.98[ASN][1000 genomes]
rs11188263	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12219240	0.95[ASN][1000 genomes]
rs12219257	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583989	0.98[ASN][1000 genomes]
rs6583990	0.85[ASN][1000 genomes]
rs7921287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
2	chr10:97031600-97046600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr10:97034000-97045000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:97034000-97046400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:97036400-97046600	Weak transcription	Fetal Lung	lung
6	chr10:97036600-97047200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:97037000-97046400	Weak transcription	Primary B cells from cord blood	blood
8	chr10:97037200-97045000	Weak transcription	Gastric	stomach
9	chr10:97038400-97046600	Weak transcription	Placenta	Placenta
10	chr10:97038600-97044600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:97038600-97044600	Weak transcription	Spleen	Spleen
12	chr10:97038600-97048800	Weak transcription	Fetal Thymus	thymus
13	chr10:97038600-97049000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:97038800-97044800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:97038800-97044800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:97038800-97046800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:97038800-97048800	Weak transcription	HSMMtube	muscle
18	chr10:97039000-97044600	Weak transcription	Lung	lung
19	chr10:97039400-97044400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:97039400-97044600	Weak transcription	Pancreas	Pancrea
21	chr10:97039400-97046800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:97039800-97044800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr10:97039800-97046200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:97040600-97044600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:97040600-97046400	Weak transcription	Adipose Nuclei	Adipose
26	chr10:97040800-97044600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr10:97040800-97046400	Weak transcription	NH-A	brain
28	chr10:97041000-97046800	Genic enhancers	Fetal Intestine Small	intestine
29	chr10:97041200-97046400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:97041400-97045000	Enhancers	Fetal Heart	heart
31	chr10:97041400-97046400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:97041400-97046600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:97041400-97049000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:97041600-97044400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:97041600-97044600	Weak transcription	Left Ventricle	heart
36	chr10:97041600-97044600	Weak transcription	NHLF	lung
37	chr10:97041600-97044800	Weak transcription	Aorta	Aorta
38	chr10:97041600-97046600	Weak transcription	Esophagus	oesophagus
39	chr10:97041800-97046600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:97042000-97046600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr10:97042000-97048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:97042200-97045000	Weak transcription	Colonic Mucosa	Colon
43	chr10:97042200-97045200	Weak transcription	HMEC	breast
44	chr10:97042200-97046200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:97042200-97046400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:97042200-97046600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr10:97042200-97046600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:97042400-97044400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:97042400-97044400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:97042400-97044600	Weak transcription	Stomach Mucosa	stomach

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