Variant report

Variant	rs10882577
Chromosome Location	chr10:97047657-97047658
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97040785..97042356-chr10:97046596..97048726,2	MCF-7	breast:
2	chr10:97046965..97049082-chr10:97066729..97068931,2	K562	blood:
3	chr10:97002381..97008883-chr10:97045266..97052392,13	MCF-7	breast:
4	chr10:97038762..97040943-chr10:97046826..97048982,3	MCF-7	breast:
5	chr10:97034466..97036166-chr10:97046747..97048932,2	K562	blood:
6	chr10:97030116..97038568-chr10:97046190..97052064,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11188257	0.97[ASN][1000 genomes]
rs11188258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11188259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11188260	0.98[ASN][1000 genomes]
rs11188262	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188263	0.98[ASN][1000 genomes]
rs11599160	0.91[EUR][1000 genomes]
rs11599166	0.81[CEU][hapmap]
rs12219240	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12219257	0.95[ASN][1000 genomes]
rs6583989	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583990	0.86[ASN][1000 genomes]
rs7916421	0.87[CEU][hapmap]
rs7921287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
2	chr10:97038600-97048800	Weak transcription	Fetal Thymus	thymus
3	chr10:97038600-97049000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:97038800-97048800	Weak transcription	HSMMtube	muscle
5	chr10:97041400-97049000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:97042000-97048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:97043800-97048000	Enhancers	HepG2	liver
8	chr10:97044200-97048000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:97044600-97047800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
10	chr10:97044600-97048200	Enhancers	Stomach Mucosa	stomach
11	chr10:97044800-97049000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:97045200-97048200	Weak transcription	Pancreas	Pancrea
13	chr10:97045400-97049200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:97045600-97049000	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:97046200-97048200	Enhancers	Small Intestine	intestine
16	chr10:97046200-97048600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:97046400-97047800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:97046400-97047800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
19	chr10:97046400-97048200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:97046400-97048800	Enhancers	NHDF-Ad	bronchial
21	chr10:97046400-97049200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:97046600-97047800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr10:97046600-97047800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr10:97046600-97047800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:97046600-97047800	Enhancers	Fetal Lung	lung
26	chr10:97046600-97047800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
27	chr10:97046600-97048400	Enhancers	Primary T cells from cord blood	blood
28	chr10:97046600-97048400	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr10:97046600-97048800	Enhancers	Liver	Liver
30	chr10:97046600-97048800	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr10:97046600-97048800	Enhancers	A549	lung
32	chr10:97046600-97049000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:97046800-97048000	Enhancers	Fetal Intestine Small	intestine
34	chr10:97046800-97049000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr10:97046800-97049000	Weak transcription	Gastric	stomach
36	chr10:97046800-97049400	Enhancers	HUVEC	blood vessel
37	chr10:97047000-97048000	Enhancers	Osteobl	bone
38	chr10:97047000-97048200	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr10:97047000-97048200	Enhancers	NHLF	lung
40	chr10:97047000-97049000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:97047000-97049000	Weak transcription	Esophagus	oesophagus
42	chr10:97047000-97049000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr10:97047000-97049000	Weak transcription	HSMM	muscle
44	chr10:97047000-97049200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr10:97047000-97049200	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr10:97047000-97049400	Enhancers	Primary B cells from peripheral blood	blood
47	chr10:97047000-97051000	Active TSS	Right Atrium	heart
48	chr10:97047200-97047800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:97047200-97048000	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr10:97047200-97048400	Weak transcription	Colonic Mucosa	Colon

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