Variant report

Variant	rs7916421
Chromosome Location	chr10:97041910-97041911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97038716..97042709-chr10:97043945..97047071,5	K562	blood:
2	chr10:97040785..97042356-chr10:97046596..97048726,2	MCF-7	breast:
3	chr10:97032986..97035982-chr10:97040343..97042259,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10882577	0.87[CEU][hapmap]
rs11599160	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11599166	0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs601746	1.00[CHD][hapmap]
rs626465	1.00[CHD][hapmap]
rs650243	1.00[CHD][hapmap]
rs6583989	0.87[AFR][1000 genomes]
rs680829	1.00[CHD][hapmap]
rs682349	1.00[CHD][hapmap]
rs684203	1.00[CHD][hapmap]
rs7916334	0.81[YRI][hapmap]
rs7921287	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
2	chr10:97031600-97046600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr10:97032600-97043600	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr10:97032800-97042800	Enhancers	Small Intestine	intestine
5	chr10:97033800-97042400	Enhancers	Osteobl	bone
6	chr10:97034000-97042000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:97034000-97042400	Enhancers	NHDF-Ad	bronchial
8	chr10:97034000-97045000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr10:97034000-97046400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:97036400-97046600	Weak transcription	Fetal Lung	lung
11	chr10:97036600-97047200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:97037000-97046400	Weak transcription	Primary B cells from cord blood	blood
13	chr10:97037200-97042200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:97037200-97045000	Weak transcription	Gastric	stomach
15	chr10:97038200-97042800	Enhancers	NHEK	skin
16	chr10:97038400-97046600	Weak transcription	Placenta	Placenta
17	chr10:97038600-97044600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:97038600-97044600	Weak transcription	Spleen	Spleen
19	chr10:97038600-97048800	Weak transcription	Fetal Thymus	thymus
20	chr10:97038600-97049000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:97038800-97044800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:97038800-97044800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:97038800-97046800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:97038800-97048800	Weak transcription	HSMMtube	muscle
25	chr10:97039000-97043200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:97039000-97044600	Weak transcription	Lung	lung
27	chr10:97039400-97043000	Weak transcription	HSMM	muscle
28	chr10:97039400-97044400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr10:97039400-97044600	Weak transcription	Pancreas	Pancrea
30	chr10:97039400-97046800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:97039600-97042400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr10:97039800-97044800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:97039800-97046200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:97040200-97042400	Flanking Active TSS	A549	lung
35	chr10:97040200-97042600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:97040400-97042000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:97040400-97042000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
38	chr10:97040400-97042200	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr10:97040400-97042400	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr10:97040600-97042200	Enhancers	Colonic Mucosa	Colon
41	chr10:97040600-97042800	Enhancers	Psoas Muscle	Psoas
42	chr10:97040600-97044600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:97040600-97046400	Weak transcription	Adipose Nuclei	Adipose
44	chr10:97040800-97042200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:97040800-97043400	Weak transcription	K562	blood
46	chr10:97040800-97044600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr10:97040800-97046400	Weak transcription	NH-A	brain
48	chr10:97041000-97042200	Enhancers	H9 Cell Line	embryonic stem cell
49	chr10:97041000-97046800	Genic enhancers	Fetal Intestine Small	intestine
50	chr10:97041200-97042000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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