Variant report

Variant	rs7916334
Chromosome Location	chr10:97042005-97042006
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97038716..97042709-chr10:97043945..97047071,5	K562	blood:
2	chr10:97040785..97042356-chr10:97046596..97048726,2	MCF-7	breast:
3	chr10:97032986..97035982-chr10:97040343..97042259,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1471730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs45456491	0.98[ASN][1000 genomes]
rs7916421	0.81[YRI][hapmap]
rs913517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9731008	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
2	chr10:97031600-97046600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr10:97032600-97043600	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr10:97032800-97042800	Enhancers	Small Intestine	intestine
5	chr10:97033800-97042400	Enhancers	Osteobl	bone
6	chr10:97034000-97042400	Enhancers	NHDF-Ad	bronchial
7	chr10:97034000-97045000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr10:97034000-97046400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:97036400-97046600	Weak transcription	Fetal Lung	lung
10	chr10:97036600-97047200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:97037000-97046400	Weak transcription	Primary B cells from cord blood	blood
12	chr10:97037200-97042200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:97037200-97045000	Weak transcription	Gastric	stomach
14	chr10:97038200-97042800	Enhancers	NHEK	skin
15	chr10:97038400-97046600	Weak transcription	Placenta	Placenta
16	chr10:97038600-97044600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:97038600-97044600	Weak transcription	Spleen	Spleen
18	chr10:97038600-97048800	Weak transcription	Fetal Thymus	thymus
19	chr10:97038600-97049000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:97038800-97044800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:97038800-97044800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:97038800-97046800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr10:97038800-97048800	Weak transcription	HSMMtube	muscle
24	chr10:97039000-97043200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:97039000-97044600	Weak transcription	Lung	lung
26	chr10:97039400-97043000	Weak transcription	HSMM	muscle
27	chr10:97039400-97044400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:97039400-97044600	Weak transcription	Pancreas	Pancrea
29	chr10:97039400-97046800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:97039600-97042400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr10:97039800-97044800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:97039800-97046200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:97040200-97042400	Flanking Active TSS	A549	lung
34	chr10:97040200-97042600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:97040400-97042200	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr10:97040400-97042400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr10:97040600-97042200	Enhancers	Colonic Mucosa	Colon
38	chr10:97040600-97042800	Enhancers	Psoas Muscle	Psoas
39	chr10:97040600-97044600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:97040600-97046400	Weak transcription	Adipose Nuclei	Adipose
41	chr10:97040800-97042200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:97040800-97043400	Weak transcription	K562	blood
43	chr10:97040800-97044600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr10:97040800-97046400	Weak transcription	NH-A	brain
45	chr10:97041000-97042200	Enhancers	H9 Cell Line	embryonic stem cell
46	chr10:97041000-97046800	Genic enhancers	Fetal Intestine Small	intestine
47	chr10:97041200-97042400	Enhancers	Liver	Liver
48	chr10:97041200-97043000	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr10:97041200-97043800	Enhancers	Duodenum Mucosa	Duodenum
50	chr10:97041200-97043800	Genic enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links