Variant report

Variant	rs9731008
Chromosome Location	chr10:97046040-97046041
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97044827..97046617-chr10:97124557..97126196,2	K562	blood:
2	chr10:97019690..97021827-chr10:97044842..97047086,2	MCF-7	breast:
3	chr10:97038716..97042709-chr10:97043945..97047071,5	K562	blood:
4	chr10:97043065..97046149-chr10:97046526..97051165,5	MCF-7	breast:
5	chr10:97002381..97008883-chr10:97045266..97052392,13	MCF-7	breast:
6	chr10:97036752..97039055-chr10:97044973..97046956,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1471730	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs45456491	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7916334	0.95[ASN][1000 genomes]
rs913517	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
2	chr10:97031600-97046600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr10:97034000-97046400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:97036400-97046600	Weak transcription	Fetal Lung	lung
5	chr10:97036600-97047200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:97037000-97046400	Weak transcription	Primary B cells from cord blood	blood
7	chr10:97038400-97046600	Weak transcription	Placenta	Placenta
8	chr10:97038600-97048800	Weak transcription	Fetal Thymus	thymus
9	chr10:97038600-97049000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:97038800-97046800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:97038800-97048800	Weak transcription	HSMMtube	muscle
12	chr10:97039400-97046800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:97039800-97046200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:97040600-97046400	Weak transcription	Adipose Nuclei	Adipose
15	chr10:97040800-97046400	Weak transcription	NH-A	brain
16	chr10:97041000-97046800	Genic enhancers	Fetal Intestine Small	intestine
17	chr10:97041200-97046400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:97041400-97046400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:97041400-97046600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:97041400-97049000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:97041600-97046600	Weak transcription	Esophagus	oesophagus
22	chr10:97041800-97046600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:97042000-97046600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:97042000-97048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:97042200-97046200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:97042200-97046400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:97042200-97046600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:97042200-97046600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:97042400-97046200	Weak transcription	Osteobl	bone
30	chr10:97042400-97046400	Weak transcription	NHDF-Ad	bronchial
31	chr10:97042400-97046600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:97042400-97046600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:97042400-97046600	Weak transcription	Liver	Liver
34	chr10:97043800-97048000	Enhancers	HepG2	liver
35	chr10:97044000-97046400	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr10:97044200-97046200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:97044200-97048000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:97044400-97046600	Enhancers	Right Atrium	heart
39	chr10:97044400-97046600	Weak transcription	HSMM	muscle
40	chr10:97044400-97047400	Genic enhancers	Fetal Intestine Large	intestine
41	chr10:97044400-97047600	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr10:97044600-97047200	Genic enhancers	NHEK	skin
43	chr10:97044600-97047400	Enhancers	Lung	lung
44	chr10:97044600-97047400	Genic enhancers	Placenta Amnion	Placenta Amnion
45	chr10:97044600-97047800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
46	chr10:97044600-97048200	Enhancers	Stomach Mucosa	stomach
47	chr10:97044800-97046600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr10:97044800-97047000	Genic enhancers	Primary B cells from peripheral blood	blood
49	chr10:97044800-97049000	Enhancers	H1 Cell Line	embryonic stem cell
50	chr10:97045000-97046400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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