Variant report

Variant	rs1471730
Chromosome Location	chr10:97047200-97047201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97040785..97042356-chr10:97046596..97048726,2	MCF-7	breast:
2	chr10:97046965..97049082-chr10:97066729..97068931,2	K562	blood:
3	chr10:97002381..97008883-chr10:97045266..97052392,13	MCF-7	breast:
4	chr10:97038762..97040943-chr10:97046826..97048982,3	MCF-7	breast:
5	chr10:97034466..97036166-chr10:97046747..97048932,2	K562	blood:
6	chr10:97030116..97038568-chr10:97046190..97052064,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs45456491	0.99[ASN][1000 genomes]
rs7916334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs913517	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9731008	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
2	chr10:97036600-97047200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:97038600-97048800	Weak transcription	Fetal Thymus	thymus
4	chr10:97038600-97049000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:97038800-97048800	Weak transcription	HSMMtube	muscle
6	chr10:97041400-97049000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:97042000-97048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:97043800-97048000	Enhancers	HepG2	liver
9	chr10:97044200-97048000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:97044400-97047400	Genic enhancers	Fetal Intestine Large	intestine
11	chr10:97044400-97047600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:97044600-97047200	Genic enhancers	NHEK	skin
13	chr10:97044600-97047400	Enhancers	Lung	lung
14	chr10:97044600-97047400	Genic enhancers	Placenta Amnion	Placenta Amnion
15	chr10:97044600-97047800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
16	chr10:97044600-97048200	Enhancers	Stomach Mucosa	stomach
17	chr10:97044800-97049000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr10:97045200-97048200	Weak transcription	Pancreas	Pancrea
19	chr10:97045400-97049200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:97045600-97049000	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:97046200-97047200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:97046200-97047400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:97046200-97048200	Enhancers	Small Intestine	intestine
24	chr10:97046200-97048600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:97046400-97047200	Enhancers	Adipose Nuclei	Adipose
26	chr10:97046400-97047400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:97046400-97047400	Genic enhancers	Primary B cells from cord blood	blood
28	chr10:97046400-97047400	Enhancers	NH-A	brain
29	chr10:97046400-97047600	Flanking Active TSS	Fetal Heart	heart
30	chr10:97046400-97047800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:97046400-97047800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
32	chr10:97046400-97048200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr10:97046400-97048800	Enhancers	NHDF-Ad	bronchial
34	chr10:97046400-97049200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:97046600-97047400	Enhancers	Aorta	Aorta
36	chr10:97046600-97047400	Enhancers	Placenta	Placenta
37	chr10:97046600-97047400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr10:97046600-97047400	Enhancers	Spleen	Spleen
39	chr10:97046600-97047400	Genic enhancers	K562	blood
40	chr10:97046600-97047600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:97046600-97047600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr10:97046600-97047600	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr10:97046600-97047800	Enhancers	H9 Cell Line	embryonic stem cell
44	chr10:97046600-97047800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr10:97046600-97047800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:97046600-97047800	Enhancers	Fetal Lung	lung
47	chr10:97046600-97047800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
48	chr10:97046600-97048400	Enhancers	Primary T cells from cord blood	blood
49	chr10:97046600-97048400	Flanking Active TSS	Duodenum Mucosa	Duodenum
50	chr10:97046600-97048800	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links