Variant report

Variant	rs45456491
Chromosome Location	chr10:97048247-97048248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97040785..97042356-chr10:97046596..97048726,2	MCF-7	breast:
2	chr10:97048197..97050132-chr10:97070905..97072692,2	MCF-7	breast:
3	chr10:97047892..97049981-chr10:97088478..97090933,2	MCF-7	breast:
4	chr10:96989099..96991002-chr10:97047738..97051859,4	MCF-7	breast:
5	chr10:97046965..97049082-chr10:97066729..97068931,2	K562	blood:
6	chr10:97002381..97008883-chr10:97045266..97052392,13	MCF-7	breast:
7	chr10:97038762..97040943-chr10:97046826..97048982,3	MCF-7	breast:
8	chr10:97034466..97036166-chr10:97046747..97048932,2	K562	blood:
9	chr10:97030116..97038568-chr10:97046190..97052064,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000234026	Chromatin interaction
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1471730	0.99[ASN][1000 genomes]
rs7916334	0.98[ASN][1000 genomes]
rs913517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9731008	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
2	chr10:97038600-97048800	Weak transcription	Fetal Thymus	thymus
3	chr10:97038600-97049000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:97038800-97048800	Weak transcription	HSMMtube	muscle
5	chr10:97041400-97049000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:97042000-97048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:97044800-97049000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr10:97045400-97049200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:97045600-97049000	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:97046200-97048600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:97046400-97048800	Enhancers	NHDF-Ad	bronchial
12	chr10:97046400-97049200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:97046600-97048400	Enhancers	Primary T cells from cord blood	blood
14	chr10:97046600-97048400	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr10:97046600-97048800	Enhancers	Liver	Liver
16	chr10:97046600-97048800	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr10:97046600-97048800	Enhancers	A549	lung
18	chr10:97046600-97049000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:97046800-97049000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:97046800-97049000	Weak transcription	Gastric	stomach
21	chr10:97046800-97049400	Enhancers	HUVEC	blood vessel
22	chr10:97047000-97049000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:97047000-97049000	Weak transcription	Esophagus	oesophagus
24	chr10:97047000-97049000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:97047000-97049000	Weak transcription	HSMM	muscle
26	chr10:97047000-97049200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr10:97047000-97049200	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr10:97047000-97049400	Enhancers	Primary B cells from peripheral blood	blood
29	chr10:97047000-97051000	Active TSS	Right Atrium	heart
30	chr10:97047200-97048400	Weak transcription	Colonic Mucosa	Colon
31	chr10:97047200-97048600	Transcr. at gene 5' and 3'	NHEK	skin
32	chr10:97047200-97049200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:97047400-97048400	Weak transcription	NH-A	brain
34	chr10:97047400-97048600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:97047400-97049000	Weak transcription	Placenta	Placenta
36	chr10:97047400-97049000	Active TSS	Psoas Muscle	Psoas
37	chr10:97047400-97049000	Weak transcription	Spleen	Spleen
38	chr10:97047400-97049400	Flanking Active TSS	HMEC	breast
39	chr10:97047400-97051200	Active TSS	Aorta	Aorta
40	chr10:97047600-97048400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr10:97047600-97049000	Active TSS	Right Ventricle	heart
42	chr10:97047600-97050000	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr10:97047800-97048400	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr10:97047800-97048600	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr10:97047800-97048800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr10:97047800-97048800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:97047800-97048800	Active TSS	GM12878-XiMat	blood
48	chr10:97047800-97049000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:97047800-97049000	Weak transcription	Fetal Lung	lung
50	chr10:97047800-97049400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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