Variant report

Variant	rs6583989
Chromosome Location	chr10:97046695-97046696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97040785..97042356-chr10:97046596..97048726,2	MCF-7	breast:
2	chr10:97019690..97021827-chr10:97044842..97047086,2	MCF-7	breast:
3	chr10:97038716..97042709-chr10:97043945..97047071,5	K562	blood:
4	chr10:97002381..97008883-chr10:97045266..97052392,13	MCF-7	breast:
5	chr10:97036752..97039055-chr10:97044973..97046956,2	MCF-7	breast:
6	chr10:97030116..97038568-chr10:97046190..97052064,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10882577	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188257	0.97[ASN][1000 genomes]
rs11188258	0.98[ASN][1000 genomes]
rs11188259	0.98[ASN][1000 genomes]
rs11188260	0.98[ASN][1000 genomes]
rs11188262	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188263	0.98[ASN][1000 genomes]
rs11599160	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12219240	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12219257	0.95[ASN][1000 genomes]
rs6583990	0.86[ASN][1000 genomes]
rs7916421	0.87[AFR][1000 genomes]
rs7921287	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
2	chr10:97036600-97047200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:97038600-97048800	Weak transcription	Fetal Thymus	thymus
4	chr10:97038600-97049000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:97038800-97046800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr10:97038800-97048800	Weak transcription	HSMMtube	muscle
7	chr10:97039400-97046800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:97041000-97046800	Genic enhancers	Fetal Intestine Small	intestine
9	chr10:97041400-97049000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:97042000-97048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:97043800-97048000	Enhancers	HepG2	liver
12	chr10:97044200-97048000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:97044400-97047400	Genic enhancers	Fetal Intestine Large	intestine
14	chr10:97044400-97047600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr10:97044600-97047200	Genic enhancers	NHEK	skin
16	chr10:97044600-97047400	Enhancers	Lung	lung
17	chr10:97044600-97047400	Genic enhancers	Placenta Amnion	Placenta Amnion
18	chr10:97044600-97047800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
19	chr10:97044600-97048200	Enhancers	Stomach Mucosa	stomach
20	chr10:97044800-97047000	Genic enhancers	Primary B cells from peripheral blood	blood
21	chr10:97044800-97049000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr10:97045200-97048200	Weak transcription	Pancreas	Pancrea
23	chr10:97045400-97049200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:97045600-97049000	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:97046000-97046800	Enhancers	Psoas Muscle	Psoas
26	chr10:97046200-97046800	Enhancers	Right Ventricle	heart
27	chr10:97046200-97046800	Genic enhancers	HMEC	breast
28	chr10:97046200-97046800	Enhancers	Osteobl	bone
29	chr10:97046200-97047000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:97046200-97047000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr10:97046200-97047200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:97046200-97047400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:97046200-97048200	Enhancers	Small Intestine	intestine
34	chr10:97046200-97048600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:97046400-97046800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:97046400-97046800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:97046400-97046800	Enhancers	NHLF	lung
38	chr10:97046400-97047000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr10:97046400-97047200	Enhancers	Adipose Nuclei	Adipose
40	chr10:97046400-97047400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:97046400-97047400	Genic enhancers	Primary B cells from cord blood	blood
42	chr10:97046400-97047400	Enhancers	NH-A	brain
43	chr10:97046400-97047600	Flanking Active TSS	Fetal Heart	heart
44	chr10:97046400-97047800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:97046400-97047800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr10:97046400-97048200	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr10:97046400-97048800	Enhancers	NHDF-Ad	bronchial
48	chr10:97046400-97049200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:97046600-97046800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr10:97046600-97046800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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