Variant report

Variant	rs11188263
Chromosome Location	chr10:97049244-97049245
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97048197..97050132-chr10:97070905..97072692,2	MCF-7	breast:
2	chr10:97047892..97049981-chr10:97088478..97090933,2	MCF-7	breast:
3	chr10:96989099..96991002-chr10:97047738..97051859,4	MCF-7	breast:
4	chr10:97002381..97008883-chr10:97045266..97052392,13	MCF-7	breast:
5	chr10:97023137..97024649-chr10:97048787..97050553,2	MCF-7	breast:
6	chr10:97030116..97038568-chr10:97046190..97052064,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction
ENSG00000234026	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10882577	0.98[ASN][1000 genomes]
rs11188257	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11188258	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11188259	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11188260	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11188262	0.98[ASN][1000 genomes]
rs12219240	0.95[ASN][1000 genomes]
rs12219257	0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6583989	0.98[ASN][1000 genomes]
rs6583990	0.87[ASN][1000 genomes]
rs7921287	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
2	chr10:97046800-97049400	Enhancers	HUVEC	blood vessel
3	chr10:97047000-97049400	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:97047000-97051000	Active TSS	Right Atrium	heart
5	chr10:97047400-97049400	Flanking Active TSS	HMEC	breast
6	chr10:97047400-97051200	Active TSS	Aorta	Aorta
7	chr10:97047600-97050000	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr10:97047800-97049400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:97047800-97051000	Active TSS	Fetal Intestine Large	intestine
10	chr10:97048000-97049400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr10:97048000-97049400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:97048200-97051400	Active TSS	Rectal Smooth Muscle	rectum
13	chr10:97048400-97050400	Active TSS	Colonic Mucosa	Colon
14	chr10:97048400-97051000	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr10:97048400-97051000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:97048400-97051000	Active TSS	Small Intestine	intestine
17	chr10:97048400-97051200	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr10:97048600-97050200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:97048800-97049400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:97048800-97049400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr10:97048800-97049400	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr10:97048800-97049400	Active TSS	Fetal Thymus	thymus
23	chr10:97048800-97049400	Flanking Active TSS	A549	lung
24	chr10:97048800-97049600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr10:97048800-97049600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr10:97048800-97049600	Flanking Active TSS	Liver	Liver
27	chr10:97048800-97049600	Active TSS	Thymus	Thymus
28	chr10:97048800-97049600	Flanking Active TSS	GM12878-XiMat	blood
29	chr10:97048800-97049800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:97048800-97049800	Flanking Active TSS	NHDF-Ad	bronchial
31	chr10:97048800-97050000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr10:97048800-97050400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
33	chr10:97048800-97051000	Active TSS	Placenta Amnion	Placenta Amnion
34	chr10:97049000-97049400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
35	chr10:97049000-97049400	Flanking Active TSS	H9 Cell Line	embryonic stem cell
36	chr10:97049000-97049400	Enhancers	Primary B cells from cord blood	blood
37	chr10:97049000-97049400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
38	chr10:97049000-97049400	Enhancers	Fetal Lung	lung
39	chr10:97049000-97049400	Bivalent/Poised TSS	Fetal Stomach	stomach
40	chr10:97049000-97049400	Flanking Active TSS	Lung	lung
41	chr10:97049000-97049400	Flanking Active TSS	Right Ventricle	heart
42	chr10:97049000-97049400	Enhancers	Spleen	Spleen
43	chr10:97049000-97049400	Flanking Active TSS	NHLF	lung
44	chr10:97049000-97049600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr10:97049000-97049600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:97049000-97049600	Flanking Active TSS	Fetal Heart	heart
47	chr10:97049000-97049600	Flanking Active TSS	Left Ventricle	heart
48	chr10:97049000-97049600	Flanking Active TSS	Pancreas	Pancrea
49	chr10:97049000-97049600	Flanking Active TSS	Psoas Muscle	Psoas
50	chr10:97049000-97049800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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