Variant report

Variant	rs11195409
Chromosome Location	chr10:112798594-112798595
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11195368	0.84[EUR][1000 genomes]
rs11195373	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11195376	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11592186	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592376	0.83[EUR][1000 genomes]
rs11593462	0.89[EUR][1000 genomes]
rs11593479	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593592	0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11593866	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11597120	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597460	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597928	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11812232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812855	0.89[EUR][1000 genomes]
rs11813262	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11813593	0.84[EUR][1000 genomes]
rs11814418	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814686	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11816033	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816247	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11816269	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816396	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11818060	0.89[EUR][1000 genomes]
rs11818747	0.89[EUR][1000 genomes]
rs11818761	0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11818771	0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818869	0.83[EUR][1000 genomes]
rs1322997	0.81[EUR][1000 genomes]
rs1327556	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535559	0.84[EUR][1000 genomes]
rs17128189	0.89[EUR][1000 genomes]
rs1885796	0.83[EUR][1000 genomes]
rs34104444	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs55647014	0.84[EUR][1000 genomes]
rs55858908	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs56237211	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs60633872	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60681723	0.81[EUR][1000 genomes]
rs61469604	0.89[EUR][1000 genomes]
rs6585018	0.81[EUR][1000 genomes]
rs6585020	0.84[EUR][1000 genomes]
rs7081726	0.89[EUR][1000 genomes]
rs74156305	0.86[EUR][1000 genomes]
rs74156307	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74156308	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs74156309	0.89[EUR][1000 genomes]
rs74156310	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs74156311	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs74156320	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156323	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923004	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112770800-112798800	Weak transcription	HMEC	breast
2	chr10:112783400-112801400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:112792800-112800400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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