Variant report

Variant	rs56237211
Chromosome Location	chr10:112662777-112662778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112661534..112663424-chr10:112677176..112680107,2	MCF-7	breast:
2	chr10:112662369..112664110-chr10:112668681..112670400,2	MCF-7	breast:
3	chr10:112631865..112634383-chr10:112661303..112663927,2	K562	blood:
4	chr10:112660652..112664278-chr10:112666505..112669018,4	K562	blood:
5	chr10:112658994..112663312-chr10:112675817..112680116,4	MCF-7	breast:
6	chr10:112642959..112645426-chr10:112661034..112663202,2	K562	blood:

Variant related genes	Relation type
ENSG00000203497	Chromatin interaction
ENSG00000150593	Chromatin interaction
ENSG00000108061	Chromatin interaction
ENSG00000214413	Chromatin interaction
ENSG00000270589	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11195368	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11195373	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11195376	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11195409	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11592186	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11592376	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593462	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593479	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11593592	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593866	0.84[EUR][1000 genomes]
rs11597120	0.95[EUR][1000 genomes]
rs11597460	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11597928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812232	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11812855	0.95[EUR][1000 genomes]
rs11813262	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813593	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814418	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11814686	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816033	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11816247	0.95[EUR][1000 genomes]
rs11816269	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11816396	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11818060	0.95[EUR][1000 genomes]
rs11818747	0.95[EUR][1000 genomes]
rs11818761	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11818771	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11818869	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12781566	1.00[ASN][1000 genomes]
rs1322997	0.97[EUR][1000 genomes]
rs1327556	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1535559	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128189	0.95[EUR][1000 genomes]
rs1885796	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34104444	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55647014	1.00[EUR][1000 genomes]
rs55858908	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60633872	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs60681723	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60877808	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61469604	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6585018	0.97[EUR][1000 genomes]
rs6585020	1.00[EUR][1000 genomes]
rs7081726	0.95[EUR][1000 genomes]
rs74156303	1.00[ASN][1000 genomes]
rs74156304	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74156305	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156307	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156309	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156311	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156320	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74156323	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7923004	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1051327	chr10:112650316-112772917	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv540774	chr10:112650316-112772917	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv1047865	chr10:112660427-112730573	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112632800-112678000	Weak transcription	Lung	lung
2	chr10:112632800-112678200	Weak transcription	Spleen	Spleen
3	chr10:112634800-112677400	Weak transcription	HUVEC	blood vessel
4	chr10:112635600-112663400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr10:112636000-112664400	Strong transcription	Fetal Thymus	thymus
6	chr10:112636400-112664800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:112643000-112667200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:112644000-112664000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:112644200-112663200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:112644200-112664400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:112644200-112678000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:112644800-112664800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr10:112644800-112675000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:112646400-112676400	Weak transcription	K562	blood
15	chr10:112647200-112664400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr10:112647200-112677400	Weak transcription	Fetal Brain Male	brain
17	chr10:112649400-112664800	Strong transcription	Primary B cells from cord blood	blood
18	chr10:112651200-112670000	Weak transcription	Fetal Stomach	stomach
19	chr10:112653400-112663200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:112654800-112665000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:112655000-112664000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr10:112655000-112664600	Strong transcription	Primary hematopoietic stem cells	blood
23	chr10:112655200-112664000	Strong transcription	Fetal Muscle Leg	muscle
24	chr10:112655200-112664200	Strong transcription	Primary T cells from cord blood	blood
25	chr10:112656200-112663200	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:112656200-112672200	Weak transcription	Fetal Heart	heart
27	chr10:112656200-112677400	Weak transcription	Stomach Mucosa	stomach
28	chr10:112656400-112664600	Strong transcription	Primary B cells from peripheral blood	blood
29	chr10:112656400-112676400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:112656400-112677600	Weak transcription	Right Ventricle	heart
31	chr10:112657200-112663000	Weak transcription	Small Intestine	intestine
32	chr10:112657200-112663000	Weak transcription	NHLF	lung
33	chr10:112657200-112663400	Strong transcription	Duodenum Mucosa	Duodenum
34	chr10:112657200-112663600	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr10:112657200-112672400	Weak transcription	Fetal Intestine Small	intestine
36	chr10:112657200-112675000	Weak transcription	Ovary	ovary
37	chr10:112657400-112664200	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr10:112657400-112665200	Weak transcription	Esophagus	oesophagus
39	chr10:112657400-112672800	Weak transcription	HepG2	liver
40	chr10:112657400-112677600	Weak transcription	Psoas Muscle	Psoas
41	chr10:112657400-112677600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr10:112657400-112677800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:112657400-112677800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:112657400-112678000	Weak transcription	Gastric	stomach
45	chr10:112657600-112677600	Weak transcription	Fetal Brain Female	brain
46	chr10:112659200-112667000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:112659200-112676400	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:112659400-112677600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr10:112659600-112677600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:112659800-112675800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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