Variant report

Variant	rs60877808
Chromosome Location	chr10:112605017-112605018
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:112596969..112605726-chr10:112629736..112633505,15	MCF-7	breast:
2	chr10:112601392..112612171-chr10:112628692..112635814,14	MCF-7	breast:
3	chr10:112604453..112606201-chr10:112652367..112654040,2	MCF-7	breast:
4	chr10:112585315..112587838-chr10:112602410..112605379,2	MCF-7	breast:
5	chr10:112603838..112606492-chr10:112617289..112618833,2	MCF-7	breast:
6	chr10:112598046..112602437-chr10:112602473..112607485,6	MCF-7	breast:
7	chr10:112604597..112607623-chr10:112608052..112611214,4	K562	blood:
8	chr10:112604056..112607553-chr10:112607737..112614942,9	MCF-7	breast:
9	chr10:112582463..112585144-chr10:112603748..112605895,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000203867	Chromatin interaction
ENSG00000203497	Chromatin interaction
ENSG00000150593	Chromatin interaction
ENSG00000232470	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11195368	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11195373	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11195376	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592186	0.89[EUR][1000 genomes]
rs11592376	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593462	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593479	0.89[EUR][1000 genomes]
rs11593592	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597120	0.89[EUR][1000 genomes]
rs11597460	0.89[EUR][1000 genomes]
rs11597928	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812855	0.89[EUR][1000 genomes]
rs11813262	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813593	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814418	0.84[EUR][1000 genomes]
rs11814686	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816033	0.84[EUR][1000 genomes]
rs11816247	0.89[EUR][1000 genomes]
rs11816269	0.89[EUR][1000 genomes]
rs11816396	0.89[EUR][1000 genomes]
rs11818060	0.89[EUR][1000 genomes]
rs11818747	0.89[EUR][1000 genomes]
rs11818761	0.89[EUR][1000 genomes]
rs11818771	0.84[EUR][1000 genomes]
rs11818869	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12781566	1.00[ASN][1000 genomes]
rs1322997	0.86[EUR][1000 genomes]
rs1327556	0.89[EUR][1000 genomes]
rs1535559	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128189	0.89[EUR][1000 genomes]
rs1885796	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34104444	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55647014	0.84[EUR][1000 genomes]
rs55858908	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56237211	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60633872	0.89[EUR][1000 genomes]
rs60681723	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61469604	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6585018	0.86[EUR][1000 genomes]
rs6585020	0.84[EUR][1000 genomes]
rs7081726	0.89[EUR][1000 genomes]
rs74156303	1.00[ASN][1000 genomes]
rs74156304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74156305	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156307	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156308	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156309	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156310	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156311	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156320	0.89[EUR][1000 genomes]
rs74156323	0.89[EUR][1000 genomes]
rs7923004	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv467455	chr10:112579299-112612471	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv552172	chr10:112579299-112612471	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv896003	chr10:112579299-112631211	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv896002	chr10:112579299-112638028	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112591400-112610600	Weak transcription	HSMMtube	muscle
2	chr10:112593200-112608200	Enhancers	Fetal Intestine Small	intestine
3	chr10:112593200-112608400	Enhancers	Fetal Intestine Large	intestine
4	chr10:112594000-112607400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:112594000-112607600	Enhancers	Small Intestine	intestine
6	chr10:112597000-112617200	Weak transcription	Psoas Muscle	Psoas
7	chr10:112597400-112605200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:112597400-112614600	Weak transcription	Aorta	Aorta
9	chr10:112597600-112605400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:112597800-112613400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:112597800-112617200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:112598000-112606800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:112598400-112605600	Weak transcription	Fetal Kidney	kidney
14	chr10:112599200-112607400	Enhancers	Stomach Mucosa	stomach
15	chr10:112599400-112607400	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr10:112599600-112613000	Enhancers	Pancreas	Pancrea
17	chr10:112600400-112607200	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:112600600-112610000	Weak transcription	HMEC	breast
19	chr10:112600600-112617200	Weak transcription	Right Ventricle	heart
20	chr10:112600800-112605800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:112600800-112613000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:112601000-112605200	Weak transcription	Ovary	ovary
23	chr10:112601000-112605200	Weak transcription	Right Atrium	heart
24	chr10:112601200-112605400	Weak transcription	Hela-S3	cervix
25	chr10:112601400-112605200	Weak transcription	Spleen	Spleen
26	chr10:112601600-112606400	Enhancers	Primary T cells from cord blood	blood
27	chr10:112602200-112606200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr10:112602400-112607200	Enhancers	Liver	Liver
29	chr10:112602400-112620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:112602600-112606800	Weak transcription	Left Ventricle	heart
31	chr10:112602600-112608200	Enhancers	Primary B cells from cord blood	blood
32	chr10:112602800-112605600	Enhancers	Fetal Heart	heart
33	chr10:112602800-112608200	Enhancers	Primary B cells from peripheral blood	blood
34	chr10:112603000-112605200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:112603000-112605400	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr10:112603200-112605600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:112603400-112606000	Weak transcription	Adipose Nuclei	Adipose
38	chr10:112603400-112606800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:112603400-112607000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr10:112603600-112606600	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:112603800-112607400	Enhancers	Lung	lung
42	chr10:112603800-112610200	Weak transcription	Thymus	Thymus
43	chr10:112604000-112605200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr10:112604000-112605200	Weak transcription	Fetal Thymus	thymus
45	chr10:112604000-112605400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:112604000-112605400	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:112604000-112607200	Enhancers	Colonic Mucosa	Colon
48	chr10:112604000-112608800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr10:112604000-112609400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr10:112604000-112609600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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