Variant report

Variant	rs11812855
Chromosome Location	chr10:112710442-112710443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112703823..112706425-chr10:112708540..112711574,4	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11195368	1.00[CEU][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11195373	0.95[EUR][1000 genomes]
rs11195376	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11195409	0.89[EUR][1000 genomes]
rs11592186	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11592376	0.82[YRI][hapmap];0.94[EUR][1000 genomes]
rs11593462	1.00[EUR][1000 genomes]
rs11593479	1.00[EUR][1000 genomes]
rs11593592	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11593866	0.89[EUR][1000 genomes]
rs11597120	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11597460	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11597928	0.92[EUR][1000 genomes]
rs11812232	0.89[EUR][1000 genomes]
rs11813262	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11813593	0.95[EUR][1000 genomes]
rs11814418	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11814686	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816033	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11816247	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11816269	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11816396	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818060	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11818747	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818761	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818771	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11818869	0.93[YRI][hapmap];0.94[EUR][1000 genomes]
rs1322997	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1327556	1.00[CEU][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1535559	1.00[CEU][hapmap];0.88[YRI][hapmap];0.95[EUR][1000 genomes]
rs17128189	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885796	0.94[EUR][1000 genomes]
rs34104444	1.00[EUR][1000 genomes]
rs55647014	0.95[EUR][1000 genomes]
rs55858908	0.95[EUR][1000 genomes]
rs56237211	0.95[EUR][1000 genomes]
rs60633872	1.00[EUR][1000 genomes]
rs60681723	0.92[EUR][1000 genomes]
rs60877808	0.89[EUR][1000 genomes]
rs61469604	1.00[EUR][1000 genomes]
rs6585018	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6585020	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156304	0.84[EUR][1000 genomes]
rs74156305	0.97[EUR][1000 genomes]
rs74156307	0.92[EUR][1000 genomes]
rs74156308	0.95[EUR][1000 genomes]
rs74156309	1.00[EUR][1000 genomes]
rs74156310	1.00[EUR][1000 genomes]
rs74156311	1.00[EUR][1000 genomes]
rs74156320	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74156323	1.00[EUR][1000 genomes]
rs7923004	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1051327	chr10:112650316-112772917	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540774	chr10:112650316-112772917	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1047865	chr10:112660427-112730573	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1048809	chr10:112683822-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112682000-112732400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:112684400-112712600	Weak transcription	HepG2	liver
3	chr10:112685200-112719200	Weak transcription	A549	lung
4	chr10:112689600-112714400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:112692000-112722000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr10:112692400-112719000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:112692400-112719000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:112692400-112724000	Weak transcription	Stomach Mucosa	stomach
9	chr10:112692600-112713600	Weak transcription	Hela-S3	cervix
10	chr10:112692600-112732400	Weak transcription	Fetal Intestine Large	intestine
11	chr10:112693600-112719200	Weak transcription	Small Intestine	intestine
12	chr10:112693600-112722000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:112695400-112722400	Weak transcription	Colonic Mucosa	Colon
14	chr10:112697200-112720400	Weak transcription	Ovary	ovary
15	chr10:112697200-112740200	Weak transcription	Thymus	Thymus
16	chr10:112697200-112745400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:112698000-112724000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:112700400-112711000	Weak transcription	HSMMtube	muscle
19	chr10:112700600-112712200	Weak transcription	Fetal Brain Male	brain
20	chr10:112700600-112764000	Weak transcription	Placenta	Placenta
21	chr10:112701200-112726800	Weak transcription	Dnd41	blood
22	chr10:112701600-112711400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:112702200-112722000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr10:112702400-112754800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:112703200-112712000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:112703200-112712400	Weak transcription	Fetal Kidney	kidney
27	chr10:112703600-112721400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:112703800-112712200	Weak transcription	Fetal Lung	lung
29	chr10:112703800-112712400	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:112703800-112718200	Weak transcription	Liver	Liver
31	chr10:112703800-112720800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:112703800-112724200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr10:112703800-112725800	Weak transcription	HUVEC	blood vessel
34	chr10:112703800-112729000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:112704600-112714600	Weak transcription	Brain Angular Gyrus	brain
36	chr10:112704800-112719000	Weak transcription	Colon Smooth Muscle	Colon
37	chr10:112705200-112712400	Weak transcription	Fetal Thymus	thymus
38	chr10:112705200-112789800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:112705400-112721200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:112705600-112711000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:112705600-112713000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:112705600-112713800	Weak transcription	Spleen	Spleen
43	chr10:112705600-112714000	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr10:112705800-112710600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr10:112705800-112711200	Weak transcription	NHLF	lung
46	chr10:112705800-112712000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:112705800-112716800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:112705800-112719000	Weak transcription	Adipose Nuclei	Adipose
49	chr10:112705800-112725400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr10:112706600-112712200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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