Variant report

Variant	rs74156305
Chromosome Location	chr10:112615725-112615726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112608440..112622028-chr10:112627331..112635995,26	MCF-7	breast:
2	chr10:112602080..112604237-chr10:112611419..112615912,4	K562	blood:

Variant related genes	Relation type
ENSG00000232470	Chromatin interaction
ENSG00000203497	Chromatin interaction
ENSG00000150593	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11195368	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11195373	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11195376	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11195409	0.86[EUR][1000 genomes]
rs11592186	0.97[EUR][1000 genomes]
rs11592376	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593462	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593479	0.97[EUR][1000 genomes]
rs11593592	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593866	0.87[EUR][1000 genomes]
rs11597120	0.97[EUR][1000 genomes]
rs11597460	0.97[EUR][1000 genomes]
rs11597928	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812232	0.86[EUR][1000 genomes]
rs11812855	0.97[EUR][1000 genomes]
rs11813262	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813593	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814418	0.92[EUR][1000 genomes]
rs11814686	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816033	0.92[EUR][1000 genomes]
rs11816247	0.97[EUR][1000 genomes]
rs11816269	0.97[EUR][1000 genomes]
rs11816396	0.97[EUR][1000 genomes]
rs11818060	0.97[EUR][1000 genomes]
rs11818747	0.97[EUR][1000 genomes]
rs11818761	0.97[EUR][1000 genomes]
rs11818771	0.92[EUR][1000 genomes]
rs11818869	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819698	0.82[AFR][1000 genomes]
rs12781566	1.00[ASN][1000 genomes]
rs1322997	0.94[EUR][1000 genomes]
rs1327556	0.97[EUR][1000 genomes]
rs1535559	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128189	0.97[EUR][1000 genomes]
rs1885796	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34104444	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55647014	0.92[EUR][1000 genomes]
rs55858908	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56237211	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60633872	0.97[EUR][1000 genomes]
rs60681723	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60877808	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61469604	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6585018	0.94[EUR][1000 genomes]
rs6585020	0.92[EUR][1000 genomes]
rs7081726	0.97[EUR][1000 genomes]
rs74156303	1.00[ASN][1000 genomes]
rs74156304	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74156307	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156308	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156309	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156310	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156311	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156320	0.97[EUR][1000 genomes]
rs74156323	0.97[EUR][1000 genomes]
rs7923004	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv896003	chr10:112579299-112631211	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv896002	chr10:112579299-112638028	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112597000-112617200	Weak transcription	Psoas Muscle	Psoas
2	chr10:112597800-112617200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:112600600-112617200	Weak transcription	Right Ventricle	heart
4	chr10:112602400-112620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:112605600-112617000	Weak transcription	Fetal Heart	heart
6	chr10:112607600-112617000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:112608200-112616000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr10:112608800-112616000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:112608800-112616000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr10:112609000-112616000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:112609200-112616000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:112609200-112616000	Enhancers	Placenta	Placenta
13	chr10:112609800-112615800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:112610600-112616000	Enhancers	Fetal Intestine Small	intestine
15	chr10:112611000-112615800	Enhancers	Primary T cells from cord blood	blood
16	chr10:112611200-112616000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:112611200-112616000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:112611200-112617200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:112611200-112619600	Weak transcription	Osteobl	bone
20	chr10:112611200-112630600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:112611400-112617000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:112611400-112617000	Weak transcription	Adipose Nuclei	Adipose
23	chr10:112612400-112617000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:112612400-112617000	Weak transcription	Left Ventricle	heart
25	chr10:112612400-112617000	Weak transcription	Spleen	Spleen
26	chr10:112612400-112617400	Weak transcription	HSMMtube	muscle
27	chr10:112612400-112618000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:112612600-112617000	Weak transcription	Gastric	stomach
29	chr10:112612600-112619000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:112612600-112619200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:112612800-112617000	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:112612800-112617000	Weak transcription	Small Intestine	intestine
33	chr10:112612800-112617000	Weak transcription	NHDF-Ad	bronchial
34	chr10:112613000-112616000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr10:112613000-112616000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:112613000-112616000	Enhancers	Duodenum Mucosa	Duodenum
37	chr10:112613000-112617000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:112613000-112617000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:112613000-112617000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr10:112613000-112617000	Weak transcription	Colonic Mucosa	Colon
41	chr10:112613000-112617000	Weak transcription	Esophagus	oesophagus
42	chr10:112613000-112617000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr10:112613000-112617200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:112613200-112616000	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr10:112613200-112617000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:112613200-112617000	Weak transcription	Liver	Liver
47	chr10:112613200-112617000	Weak transcription	Hela-S3	cervix
48	chr10:112613400-112617000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr10:112613600-112617000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:112613600-112617000	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links