Variant report

Variant	rs74156303
Chromosome Location	chr10:112596288-112596289
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112595142..112598000-chr10:112598857..112603163,4	MCF-7	breast:
2	chr10:112595791..112597463-chr10:112601395..112603018,2	K562	blood:
3	chr10:112580829..112583649-chr10:112594219..112597550,3	MCF-7	breast:
4	chr10:112594090..112596413-chr10:112629473..112632431,2	K562	blood:

Variant related genes	Relation type
ENSG00000232470	Chromatin interaction
ENSG00000150593	Chromatin interaction
ENSG00000203867	Chromatin interaction
ENSG00000203497	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11195346	0.85[EUR][1000 genomes]
rs11195368	1.00[ASN][1000 genomes]
rs11195373	1.00[ASN][1000 genomes]
rs11195376	1.00[ASN][1000 genomes]
rs11592376	1.00[ASN][1000 genomes]
rs11593462	1.00[ASN][1000 genomes]
rs11593592	1.00[ASN][1000 genomes]
rs11597928	1.00[ASN][1000 genomes]
rs11813262	1.00[ASN][1000 genomes]
rs11813593	1.00[ASN][1000 genomes]
rs11814686	1.00[ASN][1000 genomes]
rs11818869	1.00[ASN][1000 genomes]
rs12781566	1.00[ASN][1000 genomes]
rs1535559	1.00[ASN][1000 genomes]
rs1885796	1.00[ASN][1000 genomes]
rs34104444	1.00[ASN][1000 genomes]
rs55858908	1.00[ASN][1000 genomes]
rs56237211	1.00[ASN][1000 genomes]
rs60681723	1.00[ASN][1000 genomes]
rs60877808	1.00[ASN][1000 genomes]
rs61469604	1.00[ASN][1000 genomes]
rs74156305	1.00[ASN][1000 genomes]
rs74156307	1.00[ASN][1000 genomes]
rs74156308	1.00[ASN][1000 genomes]
rs74156309	1.00[ASN][1000 genomes]
rs74156310	1.00[ASN][1000 genomes]
rs74156311	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv467455	chr10:112579299-112612471	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv552172	chr10:112579299-112612471	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv896003	chr10:112579299-112631211	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv896002	chr10:112579299-112638028	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112588000-112597200	Weak transcription	Adipose Nuclei	Adipose
2	chr10:112588200-112601600	Weak transcription	Brain Anterior Caudate	brain
3	chr10:112591400-112610600	Weak transcription	HSMMtube	muscle
4	chr10:112592400-112596400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr10:112592400-112596800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:112592400-112597800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr10:112592400-112598000	Enhancers	Fetal Thymus	thymus
8	chr10:112592400-112598400	Enhancers	Primary T cells from cord blood	blood
9	chr10:112592600-112596400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr10:112592600-112597200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr10:112592600-112598000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr10:112592800-112604200	Enhancers	Placenta	Placenta
13	chr10:112593000-112597800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:112593000-112600400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr10:112593200-112596800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:112593200-112597600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:112593200-112608200	Enhancers	Fetal Intestine Small	intestine
18	chr10:112593200-112608400	Enhancers	Fetal Intestine Large	intestine
19	chr10:112593400-112596400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:112593400-112597800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:112593600-112596400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:112593600-112597000	Enhancers	Rectal Smooth Muscle	rectum
23	chr10:112593600-112598200	Enhancers	Colon Smooth Muscle	Colon
24	chr10:112593800-112597200	Genic enhancers	Left Ventricle	heart
25	chr10:112593800-112597400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr10:112593800-112597600	Enhancers	Right Atrium	heart
27	chr10:112593800-112598400	Enhancers	Fetal Kidney	kidney
28	chr10:112593800-112602200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr10:112594000-112597600	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr10:112594000-112598000	Genic enhancers	Fetal Heart	heart
31	chr10:112594000-112599200	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr10:112594000-112602800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:112594000-112607400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr10:112594000-112607600	Enhancers	Small Intestine	intestine
35	chr10:112594200-112597800	Enhancers	Spleen	Spleen
36	chr10:112594400-112597000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:112594600-112596600	Weak transcription	Psoas Muscle	Psoas
38	chr10:112594600-112597000	Enhancers	Fetal Brain Male	brain
39	chr10:112594600-112597400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr10:112594800-112596800	Weak transcription	Lung	lung
41	chr10:112594800-112599000	Weak transcription	Hela-S3	cervix
42	chr10:112594800-112600000	Enhancers	HepG2	liver
43	chr10:112594800-112600200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr10:112594800-112600600	Weak transcription	Fetal Lung	lung
45	chr10:112594800-112601800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:112595000-112596600	Weak transcription	Fetal Brain Female	brain
47	chr10:112595000-112597000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:112595000-112597000	Weak transcription	NHEK	skin
49	chr10:112595000-112597200	Weak transcription	K562	blood
50	chr10:112595000-112598200	Enhancers	Stomach Smooth Muscle	stomach

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