Variant report

Variant	rs11196942
Chromosome Location	chr10:116596872-116596873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10490909	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10885613	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10885614	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10885618	0.90[EUR][1000 genomes]
rs10885620	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885622	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196924	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11196929	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196930	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196932	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196935	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11196936	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196937	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196939	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196940	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196941	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196943	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196944	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196945	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11196947	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196948	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196950	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11196951	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11196952	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196953	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196959	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196962	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11819372	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12218498	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12415173	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1359079	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1359080	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17095662	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17586888	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17663387	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17663670	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1924034	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2146805	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2181563	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2420065	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2420066	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2420067	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2420069	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35221086	0.83[ASN][1000 genomes]
rs35453961	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758603	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4752255	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4752256	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4752322	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4752347	0.84[EUR][1000 genomes]
rs55671354	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55759483	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58587374	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61596353	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61867965	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61868024	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6585300	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7077148	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7079877	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7081975	0.94[EUR][1000 genomes]
rs7082836	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7093686	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7095816	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs758585	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs765173	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs765174	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7895830	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7897937	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7898347	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7903663	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7904188	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7907837	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7908237	0.89[EUR][1000 genomes]
rs7908665	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7914792	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7915943	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7918129	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7919649	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7920216	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7923693	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8181444	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11196942	FAM160B1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116582600-116597000	Weak transcription	Spleen	Spleen
2	chr10:116582800-116604400	Weak transcription	Esophagus	oesophagus
3	chr10:116583000-116617600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:116583200-116616800	Weak transcription	K562	blood
5	chr10:116583800-116601600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:116584400-116597400	Weak transcription	Fetal Brain Male	brain
7	chr10:116584600-116608400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:116586000-116604800	Weak transcription	Fetal Heart	heart
9	chr10:116586200-116600200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:116588800-116605600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:116589200-116609000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:116589400-116602800	Weak transcription	Gastric	stomach
13	chr10:116589600-116602600	Weak transcription	Pancreas	Pancrea
14	chr10:116589600-116609000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:116589600-116626600	Weak transcription	Stomach Mucosa	stomach
16	chr10:116589600-116640600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:116590000-116604400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr10:116590200-116614400	Strong transcription	HSMM	muscle
19	chr10:116590400-116609800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:116590600-116597400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:116590600-116600800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:116590800-116599200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr10:116590800-116600800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:116590800-116609400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:116590800-116609600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:116590800-116613200	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr10:116590800-116614800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:116590800-116616600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr10:116590800-116624400	Strong transcription	Dnd41	blood
30	chr10:116590800-116625600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:116590800-116626400	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr10:116591000-116598800	Strong transcription	Primary hematopoietic stem cells	blood
33	chr10:116591000-116601200	Strong transcription	Fetal Lung	lung
34	chr10:116591000-116603400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:116591000-116606800	Strong transcription	Liver	Liver
36	chr10:116591000-116610800	Strong transcription	Fetal Intestine Large	intestine
37	chr10:116591000-116616000	Strong transcription	Placenta	Placenta
38	chr10:116591000-116619400	Strong transcription	Fetal Muscle Leg	muscle
39	chr10:116591000-116624800	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr10:116591000-116626600	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:116591200-116598800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr10:116591200-116600000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:116591200-116602800	Weak transcription	Right Ventricle	heart
44	chr10:116591200-116602800	Weak transcription	Small Intestine	intestine
45	chr10:116591200-116610600	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr10:116591400-116602800	Weak transcription	Aorta	Aorta
47	chr10:116591600-116597200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:116591600-116598200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr10:116591800-116600000	Weak transcription	NHEK	skin
50	chr10:116591800-116600800	Strong transcription	NHDF-Ad	bronchial

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