Variant report

Variant	rs2146805
Chromosome Location	chr10:116604703-116604704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1046492	0.86[AFR][1000 genomes]
rs10490908	0.86[AFR][1000 genomes]
rs10490909	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885613	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885614	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885615	0.80[ASN][1000 genomes]
rs10885616	0.80[ASN][1000 genomes]
rs10885618	0.88[EUR][1000 genomes]
rs10885620	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885621	0.81[ASN][1000 genomes]
rs10885622	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11196924	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11196925	0.81[ASN][1000 genomes]
rs11196926	0.81[ASN][1000 genomes]
rs11196929	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196930	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196931	0.81[ASN][1000 genomes]
rs11196932	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196935	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196936	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196937	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196939	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196940	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196941	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196942	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196943	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196944	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196945	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11196946	0.81[ASN][1000 genomes]
rs11196947	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196948	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196950	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11196951	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11196952	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196953	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196954	0.80[ASN][1000 genomes]
rs11196955	0.80[ASN][1000 genomes]
rs11196956	0.80[ASN][1000 genomes]
rs11196957	0.80[ASN][1000 genomes]
rs11196959	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11196962	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11818115	0.85[AFR][1000 genomes]
rs11819372	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12218498	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411629	0.80[ASN][1000 genomes]
rs12414613	0.80[ASN][1000 genomes]
rs12415173	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765350	0.85[AFR][1000 genomes]
rs12773943	0.85[AFR][1000 genomes]
rs1359079	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359080	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092480	0.81[ASN][1000 genomes]
rs17092491	0.81[ASN][1000 genomes]
rs17092497	0.86[AFR][1000 genomes]
rs17092542	0.85[AFR][1000 genomes]
rs17095662	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17586888	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17663387	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17663670	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924034	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1966384	0.85[AFR][1000 genomes]
rs2016966	0.80[ASN][1000 genomes]
rs2146806	0.85[AFR][1000 genomes]
rs2181563	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2286632	0.80[ASN][1000 genomes]
rs2420065	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420066	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420067	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420069	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3180654	0.86[AFR][1000 genomes]
rs34064819	0.86[AFR][1000 genomes]
rs34683721	0.86[AFR][1000 genomes]
rs35010779	0.85[AFR][1000 genomes]
rs35221086	0.86[ASN][1000 genomes]
rs35453961	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35622181	0.85[AFR][1000 genomes]
rs35628210	0.85[AFR][1000 genomes]
rs3758603	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41284358	0.86[AFR][1000 genomes]
rs4277024	0.81[ASN][1000 genomes]
rs4752255	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4752256	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4752322	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4752347	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55671354	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55759483	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58587374	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60820172	0.85[AFR][1000 genomes]
rs61596353	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867965	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61868018	0.86[AFR][1000 genomes]
rs61868024	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6585300	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7072356	0.85[AFR][1000 genomes]
rs7072364	0.86[AFR][1000 genomes]
rs7074729	0.83[AFR][1000 genomes]
rs7075888	0.84[AFR][1000 genomes]
rs7077148	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7079877	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081975	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7082836	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7093674	0.81[AFR][1000 genomes]
rs7093686	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7094072	0.85[AFR][1000 genomes]
rs7095816	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72833128	0.81[ASN][1000 genomes]
rs72833130	0.81[ASN][1000 genomes]
rs758585	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs765173	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs765174	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7895551	0.85[AFR][1000 genomes]
rs7895830	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7897937	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898347	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7903663	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904188	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907837	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7908237	0.87[EUR][1000 genomes]
rs7908665	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7909566	0.85[AFR][1000 genomes]
rs7909657	0.85[AFR][1000 genomes]
rs7914792	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915943	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7918129	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7918253	0.86[AFR][1000 genomes]
rs7918388	0.86[AFR][1000 genomes]
rs7919649	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7920216	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923295	0.86[AFR][1000 genomes]
rs7923693	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8181444	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv831996	chr10:116601552-116772968	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2146805	FAM160B1	cis	Esophagus Muscularis	GTEx
rs2146805	FAM160B1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116583000-116617600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:116583200-116616800	Weak transcription	K562	blood
3	chr10:116584600-116608400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:116586000-116604800	Weak transcription	Fetal Heart	heart
5	chr10:116588800-116605600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:116589200-116609000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:116589600-116609000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:116589600-116626600	Weak transcription	Stomach Mucosa	stomach
9	chr10:116589600-116640600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:116590200-116614400	Strong transcription	HSMM	muscle
11	chr10:116590400-116609800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:116590800-116609400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:116590800-116609600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:116590800-116613200	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr10:116590800-116614800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:116590800-116616600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:116590800-116624400	Strong transcription	Dnd41	blood
18	chr10:116590800-116625600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:116590800-116626400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr10:116591000-116606800	Strong transcription	Liver	Liver
21	chr10:116591000-116610800	Strong transcription	Fetal Intestine Large	intestine
22	chr10:116591000-116616000	Strong transcription	Placenta	Placenta
23	chr10:116591000-116619400	Strong transcription	Fetal Muscle Leg	muscle
24	chr10:116591000-116624800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr10:116591000-116626600	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:116591200-116610600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr10:116591800-116614400	Strong transcription	Osteobl	bone
28	chr10:116592400-116611000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr10:116592400-116612400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:116592400-116613200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:116592400-116614000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:116592400-116625200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:116592600-116616600	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr10:116592800-116612400	Strong transcription	Primary T cells from cord blood	blood
35	chr10:116593000-116613000	Strong transcription	Fetal Thymus	thymus
36	chr10:116593000-116616800	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:116593200-116613600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:116594400-116609000	Strong transcription	Primary B cells from cord blood	blood
39	chr10:116594600-116610400	Strong transcription	HSMMtube	muscle
40	chr10:116594600-116610600	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr10:116594800-116612400	Strong transcription	Thymus	Thymus
42	chr10:116594800-116612600	Strong transcription	GM12878-XiMat	blood
43	chr10:116595800-116623000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr10:116596000-116617000	Strong transcription	Adipose Nuclei	Adipose
45	chr10:116596200-116609800	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:116596200-116610800	Strong transcription	Ovary	ovary
47	chr10:116596400-116605400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:116596600-116605200	Strong transcription	Fetal Stomach	stomach
49	chr10:116596600-116610600	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:116596800-116610800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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