Variant report

Variant	rs55759483
Chromosome Location	chr10:116573423-116573424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116567584..116574580-chr10:116575101..116583231,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10490909	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885613	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885614	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885618	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885620	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885622	0.88[ASN][1000 genomes]
rs11196924	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196929	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196930	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196932	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196935	0.90[EUR][1000 genomes]
rs11196936	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196937	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196939	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196940	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196941	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196942	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11196943	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196944	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196945	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11196947	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196948	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196950	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11196951	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11196952	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196953	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11196959	0.88[ASN][1000 genomes]
rs11196962	0.84[ASN][1000 genomes]
rs11819372	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218498	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12415173	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1359079	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1359080	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17095662	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17586888	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17663387	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17663670	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1924034	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146805	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2181563	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2420065	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2420066	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2420067	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2420069	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35453961	0.88[ASN][1000 genomes]
rs3758603	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4752255	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4752256	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752322	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752347	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55671354	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58587374	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61596353	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61867965	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61868024	0.88[ASN][1000 genomes]
rs6585300	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073309	0.84[ASN][1000 genomes]
rs7077148	0.88[ASN][1000 genomes]
rs7079877	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7081975	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7082836	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7089973	0.83[AFR][1000 genomes]
rs7093686	0.82[EUR][1000 genomes]
rs7095816	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs758585	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765173	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs765174	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7895830	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7897937	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7898347	0.88[ASN][1000 genomes]
rs7903663	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7904188	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7907837	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7908237	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7908665	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7914792	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7915943	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7918129	0.88[ASN][1000 genomes]
rs7919649	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7920216	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7923693	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8181444	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs55759483	FAM160B1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116569800-116580600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:116570600-116574000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:116570600-116575600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:116571000-116580600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:116572000-116575600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:116572200-116580600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:116572200-116580800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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