Variant report

Variant	rs7089973
Chromosome Location	chr10:116569565-116569566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116567584..116574580-chr10:116575101..116583231,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1046492	0.83[CEU][hapmap]
rs10490908	0.83[CEU][hapmap]
rs11196996	1.00[JPT][hapmap]
rs12771956	0.91[EUR][1000 genomes]
rs12772800	0.87[EUR][1000 genomes]
rs12775180	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs17092542	0.83[CEU][hapmap]
rs17721283	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs17721905	1.00[JPT][hapmap]
rs17794346	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs34187191	0.81[EUR][1000 genomes]
rs36089581	0.88[EUR][1000 genomes]
rs55711292	0.89[EUR][1000 genomes]
rs55759483	0.83[AFR][1000 genomes]
rs61867966	0.91[EUR][1000 genomes]
rs61867967	0.84[EUR][1000 genomes]
rs68085797	0.87[EUR][1000 genomes]
rs7074729	0.83[CEU][hapmap]
rs7075888	0.83[CEU][hapmap]
rs7094072	0.88[CEU][hapmap]
rs749649	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs7895551	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs7908237	0.80[AFR][1000 genomes]
rs7909566	0.83[CEU][hapmap]
rs7909657	0.82[CEU][hapmap]
rs7923295	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116556800-116572800	Weak transcription	Pancreas	Pancrea
2	chr10:116561800-116570600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:116562000-116570400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:116567000-116570400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:116567600-116571800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr10:116568000-116572200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:116568600-116571600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:116568600-116571800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr10:116568800-116571600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:116569000-116572200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:116569400-116569600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:116569400-116569600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr10:116569400-116569800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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