Variant report

Variant	rs61867966
Chromosome Location	chr10:116584362-116584363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1046492	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490908	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818115	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765350	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771956	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772800	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12773943	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775180	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092497	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092542	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17721283	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17794346	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966384	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146806	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3180654	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34064819	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34187191	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34683721	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35010779	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35622181	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35628210	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36036948	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36089581	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41284358	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55711292	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60820172	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867967	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61868018	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68085797	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072356	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072364	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074729	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075888	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089973	0.91[EUR][1000 genomes]
rs7093674	1.00[ASN][1000 genomes]
rs7094072	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs749649	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895551	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909566	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909657	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918253	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918388	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923295	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61867966	FAM160B1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116580600-116584600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:116580800-116584600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:116581000-116584400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr10:116581000-116584800	Active TSS	Aorta	Aorta
5	chr10:116582200-116585200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:116582600-116584600	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr10:116582600-116585800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:116582600-116589000	Weak transcription	Gastric	stomach
9	chr10:116582600-116589400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:116582600-116596800	Weak transcription	Lung	lung
11	chr10:116582600-116597000	Weak transcription	Spleen	Spleen
12	chr10:116582800-116584600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:116582800-116584800	Weak transcription	Pancreas	Pancrea
14	chr10:116582800-116585800	Weak transcription	Left Ventricle	heart
15	chr10:116582800-116589000	Weak transcription	Right Ventricle	heart
16	chr10:116582800-116593000	Weak transcription	Colonic Mucosa	Colon
17	chr10:116582800-116604400	Weak transcription	Esophagus	oesophagus
18	chr10:116583000-116584400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:116583000-116584600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr10:116583000-116584800	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr10:116583000-116584800	Enhancers	Rectal Smooth Muscle	rectum
22	chr10:116583000-116585400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr10:116583000-116586000	Enhancers	Fetal Heart	heart
24	chr10:116583000-116586200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:116583000-116586800	Enhancers	Placenta	Placenta
26	chr10:116583000-116589400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:116583000-116593200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:116583000-116594800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:116583000-116596200	Weak transcription	Brain Substantia Nigra	brain
30	chr10:116583000-116617600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr10:116583200-116584400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:116583200-116584400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:116583200-116584400	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr10:116583200-116584600	Enhancers	Primary T cells from cord blood	blood
35	chr10:116583200-116584600	Enhancers	Brain Cingulate Gyrus	brain
36	chr10:116583200-116584600	Enhancers	Fetal Kidney	kidney
37	chr10:116583200-116585000	Enhancers	Primary T cells fromperipheralblood	blood
38	chr10:116583200-116585000	Enhancers	Colon Smooth Muscle	Colon
39	chr10:116583200-116586000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:116583200-116586200	Enhancers	Liver	Liver
41	chr10:116583200-116586400	Enhancers	Hela-S3	cervix
42	chr10:116583200-116586600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr10:116583200-116587000	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr10:116583200-116587400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:116583200-116587400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr10:116583200-116587600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:116583200-116587800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:116583200-116587800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr10:116583200-116588000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:116583200-116590600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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