Variant report

Variant	rs12771956
Chromosome Location	chr10:116576228-116576229
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116567584..116574580-chr10:116575101..116583231,11	MCF-7	breast:
2	chr10:116575494..116578184-chr10:116579422..116580946,2	K562	blood:
3	chr10:116574613..116576880-chr10:116580074..116582189,2	MCF-7	breast:
4	chr10:116575612..116578929-chr10:116581323..116583414,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215760	Chromatin interaction
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1046492	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490908	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818115	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765350	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772800	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12773943	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775180	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092497	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092542	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17721283	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17794346	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966384	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146806	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3180654	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34064819	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34187191	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34683721	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35010779	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35622181	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35628210	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36036948	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36089581	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41284358	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55711292	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60820172	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867966	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61867967	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61868018	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68085797	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072356	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072364	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074729	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075888	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089973	0.91[EUR][1000 genomes]
rs7093674	1.00[ASN][1000 genomes]
rs7094072	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs749649	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895551	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909566	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909657	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918253	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918388	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923295	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv518081	chr10:116576189-116582502	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12771956	FAM160B1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116569800-116580600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:116571000-116580600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:116572200-116580600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:116572200-116580800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:116575200-116578200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:116575600-116576800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:116575800-116579400	Weak transcription	Liver	Liver
8	chr10:116576000-116581000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:116576000-116581000	Weak transcription	NHDF-Ad	bronchial
10	chr10:116576200-116579000	Weak transcription	Osteobl	bone
11	chr10:116576200-116579600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:116576200-116581000	Weak transcription	Primary monocytes fromperipheralblood	blood

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