Variant report

Variant	rs7093686
Chromosome Location	chr10:116626940-116626941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10490909	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885613	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885614	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885618	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885620	0.83[EUR][1000 genomes]
rs10885622	0.89[ASN][1000 genomes]
rs11196924	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196929	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196930	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196932	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196935	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11196936	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196937	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196939	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196940	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196941	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196942	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11196943	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196944	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196945	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11196947	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196948	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196950	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11196951	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11196952	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196953	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196959	0.89[ASN][1000 genomes]
rs11196962	0.83[ASN][1000 genomes]
rs11819372	0.82[EUR][1000 genomes]
rs12218498	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12415173	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1359079	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1359080	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17095662	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17586888	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17663387	0.82[EUR][1000 genomes]
rs17663670	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1924034	0.82[EUR][1000 genomes]
rs2146805	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2181563	0.82[EUR][1000 genomes]
rs2420065	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2420066	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2420067	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2420069	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35453961	0.89[ASN][1000 genomes]
rs3758603	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752255	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4752322	0.83[EUR][1000 genomes]
rs55671354	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55759483	0.82[EUR][1000 genomes]
rs58587374	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61596353	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61867965	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61868024	0.88[ASN][1000 genomes]
rs7077148	0.89[ASN][1000 genomes]
rs7079877	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7081975	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7095816	0.83[EUR][1000 genomes]
rs758585	0.82[EUR][1000 genomes]
rs765173	0.82[EUR][1000 genomes]
rs765174	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7895830	0.83[EUR][1000 genomes]
rs7897937	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7898347	0.89[ASN][1000 genomes]
rs7903663	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7904188	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7907837	0.81[EUR][1000 genomes]
rs7908665	0.83[EUR][1000 genomes]
rs7914792	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7915943	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7918129	0.89[ASN][1000 genomes]
rs7919649	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920216	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7923693	0.83[EUR][1000 genomes]
rs8181444	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv831996	chr10:116601552-116772968	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7093686	FAM160B1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116589600-116640600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:116604800-116627200	Weak transcription	Small Intestine	intestine
3	chr10:116609600-116634800	Weak transcription	Spleen	Spleen
4	chr10:116609600-116639400	Weak transcription	Pancreas	Pancrea
5	chr10:116610200-116634600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:116610400-116628000	Weak transcription	Esophagus	oesophagus
7	chr10:116610600-116628000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:116611600-116641000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:116614800-116628400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:116617000-116627400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:116617000-116630200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:116617400-116640600	Weak transcription	Fetal Intestine Small	intestine
13	chr10:116619400-116627200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:116619400-116627400	Weak transcription	Lung	lung
15	chr10:116619400-116634400	Weak transcription	Fetal Brain Male	brain
16	chr10:116619400-116636000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:116619400-116636400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:116619400-116641600	Weak transcription	Aorta	Aorta
19	chr10:116619600-116627000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:116619800-116629400	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:116619800-116634800	Weak transcription	Fetal Brain Female	brain
22	chr10:116620600-116635000	Weak transcription	Fetal Stomach	stomach
23	chr10:116621200-116629800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:116621400-116634800	Weak transcription	HepG2	liver
25	chr10:116621400-116636000	Weak transcription	Right Ventricle	heart
26	chr10:116621600-116628000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:116621600-116629400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:116621800-116639600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:116621800-116639600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:116622000-116639200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:116622200-116627200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:116622200-116639000	Weak transcription	A549	lung
33	chr10:116622600-116628000	Weak transcription	HMEC	breast
34	chr10:116622600-116628000	Weak transcription	NHLF	lung
35	chr10:116622600-116631000	Weak transcription	Fetal Muscle Leg	muscle
36	chr10:116622600-116636800	Weak transcription	Brain Germinal Matrix	brain
37	chr10:116622800-116627200	Weak transcription	Left Ventricle	heart
38	chr10:116622800-116627800	Weak transcription	HSMMtube	muscle
39	chr10:116622800-116628000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:116622800-116628000	Weak transcription	NHEK	skin
41	chr10:116622800-116628400	Weak transcription	Hela-S3	cervix
42	chr10:116622800-116629400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:116622800-116636400	Weak transcription	Ovary	ovary
44	chr10:116623000-116634600	Weak transcription	Fetal Intestine Large	intestine
45	chr10:116623000-116634800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:116623600-116627400	Weak transcription	Primary B cells from cord blood	blood
47	chr10:116623800-116629600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr10:116623800-116634600	Weak transcription	GM12878-XiMat	blood
49	chr10:116624000-116627400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr10:116624000-116634400	Weak transcription	Fetal Thymus	thymus

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