Variant report

Variant	rs17092491
Chromosome Location	chr10:116602805-116602806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116585905..116588338-chr10:116602165..116603974,2	MCF-7	breast:
2	chr10:116601872..116604091-chr10:116621422..116624270,3	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10490909	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs10885613	0.81[ASN][1000 genomes]
rs10885614	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs10885615	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885616	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885621	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885622	0.88[JPT][hapmap]
rs10885623	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10885625	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs11196924	0.85[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs11196925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196926	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11196929	0.81[ASN][1000 genomes]
rs11196930	0.81[ASN][1000 genomes]
rs11196931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196932	0.81[ASN][1000 genomes]
rs11196936	0.81[ASN][1000 genomes]
rs11196937	0.81[ASN][1000 genomes]
rs11196939	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs11196940	0.81[ASN][1000 genomes]
rs11196941	0.81[ASN][1000 genomes]
rs11196943	0.81[ASN][1000 genomes]
rs11196944	0.81[ASN][1000 genomes]
rs11196945	0.88[JPT][hapmap]
rs11196946	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11196947	0.81[ASN][1000 genomes]
rs11196948	0.81[ASN][1000 genomes]
rs11196950	0.81[ASN][1000 genomes]
rs11196952	0.81[ASN][1000 genomes]
rs11196953	0.81[ASN][1000 genomes]
rs11196954	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11196955	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11196956	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11196957	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11196964	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs11196970	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs11196971	0.84[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap]
rs12218498	0.81[ASN][1000 genomes]
rs12219102	0.83[CHB][hapmap]
rs12411629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12414613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12415173	0.81[ASN][1000 genomes]
rs1359079	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1359080	0.81[ASN][1000 genomes]
rs17092480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092493	0.87[AFR][1000 genomes]
rs17095662	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs17586888	0.81[ASN][1000 genomes]
rs17663387	0.82[JPT][hapmap]
rs17663670	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2016966	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2146805	0.81[ASN][1000 genomes]
rs2181563	0.82[JPT][hapmap]
rs2286632	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2420065	0.81[ASN][1000 genomes]
rs2420066	0.81[ASN][1000 genomes]
rs2420067	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2420069	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs3758603	0.81[ASN][1000 genomes]
rs4277024	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4752255	0.82[JPT][hapmap]
rs4752322	0.84[JPT][hapmap]
rs4752347	0.84[JPT][hapmap]
rs55671354	0.80[ASN][1000 genomes]
rs58549916	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58587374	0.81[ASN][1000 genomes]
rs61596353	0.81[ASN][1000 genomes]
rs61867965	0.81[ASN][1000 genomes]
rs6585300	0.82[JPT][hapmap]
rs7079877	0.81[ASN][1000 genomes]
rs72833128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833130	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs758585	0.82[JPT][hapmap]
rs765173	0.84[JPT][hapmap]
rs765174	0.80[ASN][1000 genomes]
rs7897937	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7898347	0.88[JPT][hapmap]
rs7903663	0.81[ASN][1000 genomes]
rs7904188	0.81[ASN][1000 genomes]
rs7908665	0.82[JPT][hapmap]
rs7914792	0.81[ASN][1000 genomes]
rs7915943	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs7919649	0.80[ASN][1000 genomes]
rs7920216	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7923693	0.82[JPT][hapmap]
rs8181444	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv831996	chr10:116601552-116772968	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116582800-116604400	Weak transcription	Esophagus	oesophagus
2	chr10:116583000-116617600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:116583200-116616800	Weak transcription	K562	blood
4	chr10:116584600-116608400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:116586000-116604800	Weak transcription	Fetal Heart	heart
6	chr10:116588800-116605600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:116589200-116609000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:116589600-116609000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:116589600-116626600	Weak transcription	Stomach Mucosa	stomach
10	chr10:116589600-116640600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:116590000-116604400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:116590200-116614400	Strong transcription	HSMM	muscle
13	chr10:116590400-116609800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:116590800-116609400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:116590800-116609600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:116590800-116613200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr10:116590800-116614800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:116590800-116616600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr10:116590800-116624400	Strong transcription	Dnd41	blood
20	chr10:116590800-116625600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:116590800-116626400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr10:116591000-116603400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:116591000-116606800	Strong transcription	Liver	Liver
24	chr10:116591000-116610800	Strong transcription	Fetal Intestine Large	intestine
25	chr10:116591000-116616000	Strong transcription	Placenta	Placenta
26	chr10:116591000-116619400	Strong transcription	Fetal Muscle Leg	muscle
27	chr10:116591000-116624800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr10:116591000-116626600	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr10:116591200-116610600	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr10:116591800-116614400	Strong transcription	Osteobl	bone
31	chr10:116592400-116611000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr10:116592400-116612400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:116592400-116613200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:116592400-116614000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:116592400-116625200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:116592600-116616600	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr10:116592800-116612400	Strong transcription	Primary T cells from cord blood	blood
38	chr10:116593000-116613000	Strong transcription	Fetal Thymus	thymus
39	chr10:116593000-116616800	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:116593200-116604200	Weak transcription	Psoas Muscle	Psoas
41	chr10:116593200-116613600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:116594400-116609000	Strong transcription	Primary B cells from cord blood	blood
43	chr10:116594600-116610400	Strong transcription	HSMMtube	muscle
44	chr10:116594600-116610600	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr10:116594800-116612400	Strong transcription	Thymus	Thymus
46	chr10:116594800-116612600	Strong transcription	GM12878-XiMat	blood
47	chr10:116595200-116603400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:116595400-116603400	Weak transcription	Colonic Mucosa	Colon
49	chr10:116595800-116623000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr10:116596000-116617000	Strong transcription	Adipose Nuclei	Adipose

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