Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10885650	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11197117	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11197120	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11197124	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11197153	0.83[JPT][hapmap]
rs11197181	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs11197183	0.91[JPT][hapmap]
rs11528271	0.84[JPT][hapmap]
rs12217550	0.82[JPT][hapmap]
rs12356495	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12357741	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12770988	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12779941	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12780535	0.82[AMR][1000 genomes]
rs2065719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2131835	0.81[ASN][1000 genomes]
rs2218395	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2291669	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34373737	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34873028	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35107379	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116923800-116935600	Weak transcription	Fetal Brain Male	brain
2	chr10:116924400-116927000	Weak transcription	Brain Germinal Matrix	brain
3	chr10:116924400-116936000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:116924600-116927600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:116924800-116927200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:116925600-116926600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:116925800-116926600	Strong transcription	Fetal Brain Female	brain
8	chr10:116925800-116928400	Weak transcription	Fetal Kidney	kidney

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