Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10885650	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10885688	0.88[AMR][1000 genomes]
rs10885699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885701	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197095	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11197120	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11197124	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11197145	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11197181	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11197189	1.00[CEU][hapmap]
rs12356495	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs12357741	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12764552	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12770988	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12779941	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12780535	0.91[AMR][1000 genomes]
rs2065719	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2131835	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2218395	0.84[EUR][1000 genomes]
rs2291669	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34373737	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34873028	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35107379	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116964800-116966800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

Quick Search: