Variant report

Variant	rs11197120
Chromosome Location	chr10:116972993-116972994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10885650	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs10885688	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10885699	0.82[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap]
rs10885701	0.91[CEU][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap]
rs11197095	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11197117	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11197124	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11197145	0.91[AMR][1000 genomes]
rs11197181	0.87[CEU][hapmap]
rs11197189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197205	0.86[CEU][hapmap]
rs11597403	1.00[YRI][hapmap]
rs12356495	0.91[CEU][hapmap];0.83[AMR][1000 genomes]
rs12357741	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12764552	0.88[AMR][1000 genomes]
rs12770988	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12779941	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12780535	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2065719	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2131835	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2218395	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2291669	0.91[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes]
rs34373737	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34873028	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35107379	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35954673	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116967000-116980400	Weak transcription	Fetal Kidney	kidney
2	chr10:116968400-116980600	Weak transcription	Aorta	Aorta
3	chr10:116971200-116973800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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