Variant report

Variant	rs10885699
Chromosome Location	chr10:117128798-117128799
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10885688	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10885701	0.84[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10885704	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197120	0.82[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap]
rs11197124	0.83[EUR][1000 genomes]
rs11197145	0.85[EUR][1000 genomes]
rs11197181	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11197187	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197189	1.00[CEU][hapmap]
rs11197194	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11197195	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11197204	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197205	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197206	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197208	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs11197212	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11197213	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11197216	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11197217	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11197255	0.82[TSI][hapmap]
rs11197258	0.84[ASW][hapmap]
rs11197286	0.82[TSI][hapmap]
rs11197294	0.82[TSI][hapmap]
rs11197299	0.82[TSI][hapmap]
rs12356495	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12764552	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12780535	0.88[EUR][1000 genomes]
rs2131835	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2291669	0.91[CEU][hapmap];0.93[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34373737	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35107379	0.81[EUR][1000 genomes]
rs35954673	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4400711	0.80[TSI][hapmap]
rs6585333	0.80[TSI][hapmap]
rs7922670	0.80[TSI][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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