Variant report

Variant	rs11197255
Chromosome Location	chr10:117271895-117271896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117270127..117272329-chr10:117272470..117274118,2	MCF-7	breast:

Extended variants
information (count: 113 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1005000	0.96[CEU][hapmap]
rs10509991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10509992	0.96[CEU][hapmap]
rs10787584	0.96[CEU][hapmap]
rs10885699	0.82[TSI][hapmap]
rs10885721	0.92[CEU][hapmap];0.85[TSI][hapmap]
rs10885722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap]
rs10885729	0.83[EUR][1000 genomes]
rs10885730	0.83[EUR][1000 genomes]
rs10885738	0.96[CEU][hapmap]
rs10885746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197189	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11197231	0.80[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11197233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197244	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197246	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197252	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197254	0.96[CEU][hapmap]
rs11197258	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs11197259	0.83[EUR][1000 genomes]
rs11197261	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197264	0.82[EUR][1000 genomes]
rs11197286	0.83[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs11197293	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs11197299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]
rs11197301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11197317	0.92[CEU][hapmap]
rs11197320	0.96[CEU][hapmap];0.85[TSI][hapmap]
rs11197337	0.96[CEU][hapmap];0.83[TSI][hapmap]
rs11197357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197369	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs11492805	0.84[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11812371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12356944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12765024	0.96[CEU][hapmap];0.85[TSI][hapmap]
rs12766723	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12767028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12781537	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1328008	0.96[CEU][hapmap]
rs1336116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1336117	0.96[CEU][hapmap]
rs1410305	0.96[CEU][hapmap]
rs1536648	0.96[CEU][hapmap]
rs1576150	0.96[CEU][hapmap]
rs1590733	0.96[CEU][hapmap];0.83[TSI][hapmap]
rs1590734	0.96[CEU][hapmap];0.83[TSI][hapmap]
rs1590736	0.96[CEU][hapmap];0.83[TSI][hapmap]
rs17724227	0.84[TSI][hapmap]
rs17802381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17802400	0.96[CEU][hapmap];0.87[TSI][hapmap]
rs1981663	0.82[CHB][hapmap]
rs2025912	0.96[CEU][hapmap]
rs2068463	0.82[CHB][hapmap]
rs2149112	0.96[CEU][hapmap]
rs2182862	0.88[EUR][1000 genomes]
rs2250483	0.96[CEU][hapmap]
rs2420083	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2420091	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2420097	0.92[CEU][hapmap]
rs2420098	0.92[CEU][hapmap]
rs2532729	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2769371	0.96[CEU][hapmap]
rs2769375	0.96[CEU][hapmap]
rs2769378	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs2769392	0.96[CEU][hapmap]
rs2769396	0.96[CEU][hapmap]
rs2769398	0.96[CEU][hapmap];0.85[TSI][hapmap]
rs2769403	0.96[CEU][hapmap];0.83[TSI][hapmap]
rs2769408	0.96[CEU][hapmap]
rs2769416	0.96[CEU][hapmap]
rs2769418	0.92[CEU][hapmap]
rs2769419	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs2769421	0.92[CEU][hapmap]
rs2784811	0.96[CEU][hapmap]
rs2784812	0.96[CEU][hapmap];0.85[TSI][hapmap]
rs2804184	0.96[CEU][hapmap]
rs2804186	0.96[CEU][hapmap]
rs2804187	0.96[CEU][hapmap]
rs2804190	0.95[CEU][hapmap]
rs2804192	0.96[CEU][hapmap];0.85[TSI][hapmap]
rs2804200	0.96[CEU][hapmap]
rs2804204	0.96[CEU][hapmap];0.85[TSI][hapmap]
rs2804206	0.96[CEU][hapmap]
rs2804207	0.96[CEU][hapmap];0.83[TSI][hapmap]
rs2804214	0.96[CEU][hapmap]
rs2804244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2804249	0.92[CEU][hapmap]
rs28414370	0.82[EUR][1000 genomes]
rs2901056	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35485324	0.88[ASN][1000 genomes]
rs35594709	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3858323	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4400711	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs4612715	0.96[CEU][hapmap]
rs4644580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6585333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs6585346	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs67702987	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7068521	0.96[CEU][hapmap]
rs7071124	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7083621	0.92[CEU][hapmap]
rs7089599	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs7093703	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs7095798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs71484988	0.81[EUR][1000 genomes]
rs7911480	0.96[CEU][hapmap]
rs7913311	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7922670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs9420197	0.96[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11197255	ATRNL1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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