Variant report

Variant	rs11197258
Chromosome Location	chr10:117277673-117277674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10509991	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10885699	0.84[ASW][hapmap]
rs10885721	0.83[TSI][hapmap]
rs10885722	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885725	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs10885729	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs10885730	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs10885746	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10885747	0.84[ASN][1000 genomes]
rs11197189	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11197216	0.80[AMR][1000 genomes]
rs11197231	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197233	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197244	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11197246	0.86[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11197247	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11197249	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197252	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197255	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs11197259	0.90[EUR][1000 genomes]
rs11197261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197264	0.89[EUR][1000 genomes]
rs11197269	0.96[CEU][hapmap]
rs11197282	0.96[CEU][hapmap]
rs11197286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap]
rs11197293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197294	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap]
rs11197299	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs11197301	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11197320	0.83[TSI][hapmap]
rs11197337	0.81[TSI][hapmap]
rs11197357	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197369	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs11492805	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11812371	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12356944	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12765024	0.83[TSI][hapmap]
rs12766723	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12767028	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12781537	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1336116	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1572401	0.96[CEU][hapmap]
rs1590733	0.81[TSI][hapmap]
rs1590734	0.81[TSI][hapmap]
rs1590736	0.81[TSI][hapmap]
rs17724227	0.96[CEU][hapmap];0.82[TSI][hapmap]
rs17802381	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17802400	0.85[TSI][hapmap]
rs1981663	0.82[CHB][hapmap]
rs2068463	0.82[CHB][hapmap]
rs2182862	0.81[EUR][1000 genomes]
rs2420083	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420091	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2532729	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2769398	0.83[TSI][hapmap]
rs2769403	0.81[TSI][hapmap]
rs2769419	1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs2784812	0.83[TSI][hapmap]
rs2804192	0.83[TSI][hapmap]
rs2804204	0.83[TSI][hapmap]
rs2804207	0.81[TSI][hapmap]
rs2804244	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28414370	0.84[ASN][1000 genomes]
rs2901056	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35485324	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35594709	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3858323	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4400711	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs4644580	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6585333	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap]
rs6585346	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs67702987	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7071124	0.86[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7089599	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs7093703	0.81[EUR][1000 genomes]
rs7095798	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.84[ASN][1000 genomes]
rs71484988	0.88[EUR][1000 genomes]
rs7913311	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7922670	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11197258	ATRNL1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links