Variant report

Variant	rs7089599
Chromosome Location	chr10:117420115-117420116
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117418967..117420684-chr10:118030504..118032478,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1005000	0.92[CEU][hapmap]
rs10509991	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10509992	0.92[CEU][hapmap]
rs10787584	0.92[CEU][hapmap]
rs10885721	0.88[CEU][hapmap]
rs10885722	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885725	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs10885738	0.92[CEU][hapmap]
rs10885746	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10885747	0.83[EUR][1000 genomes]
rs10885762	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197231	1.00[CHB][hapmap]
rs11197233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197246	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs11197247	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197249	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197252	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197254	0.92[CEU][hapmap]
rs11197255	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs11197258	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs11197261	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197286	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs11197293	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197294	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs11197299	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs11197301	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197317	0.88[CEU][hapmap]
rs11197320	0.92[CEU][hapmap]
rs11197337	0.92[CEU][hapmap]
rs11197345	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11197346	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11197357	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap]
rs11492805	0.80[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11812371	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12356944	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12764844	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765024	0.92[CEU][hapmap]
rs12767028	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs1328008	0.92[CEU][hapmap]
rs1336116	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1336117	0.92[CEU][hapmap]
rs1410304	0.80[EUR][1000 genomes]
rs1410305	0.92[CEU][hapmap]
rs1536648	0.92[CEU][hapmap]
rs1576150	0.92[CEU][hapmap]
rs1590733	0.92[CEU][hapmap]
rs1590734	0.92[CEU][hapmap]
rs1590736	0.92[CEU][hapmap]
rs17802381	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17802400	0.92[CEU][hapmap]
rs1981663	0.82[CHB][hapmap]
rs2025912	0.92[CEU][hapmap]
rs2068463	0.82[CHB][hapmap]
rs2149112	0.92[CEU][hapmap]
rs2250483	0.92[CEU][hapmap]
rs2420091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420095	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420096	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2420097	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2420098	0.96[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs2532727	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2532728	0.96[EUR][1000 genomes]
rs2532729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2532731	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2769371	0.92[CEU][hapmap]
rs2769375	0.92[CEU][hapmap]
rs2769378	0.92[CEU][hapmap];0.80[TSI][hapmap]
rs2769392	0.92[CEU][hapmap]
rs2769396	0.92[CEU][hapmap]
rs2769398	0.92[CEU][hapmap]
rs2769403	0.92[CEU][hapmap]
rs2769408	0.92[CEU][hapmap]
rs2769416	0.92[CEU][hapmap]
rs2769418	0.96[CEU][hapmap];0.87[TSI][hapmap]
rs2769419	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs2769421	0.96[CEU][hapmap]
rs2769424	0.80[EUR][1000 genomes]
rs2784811	0.92[CEU][hapmap]
rs2784812	0.92[CEU][hapmap]
rs2804184	0.92[CEU][hapmap]
rs2804186	0.92[CEU][hapmap]
rs2804187	0.92[CEU][hapmap]
rs2804190	0.95[CEU][hapmap]
rs2804192	0.92[CEU][hapmap]
rs2804200	0.92[CEU][hapmap]
rs2804204	0.92[CEU][hapmap]
rs2804206	0.92[CEU][hapmap]
rs2804207	0.92[CEU][hapmap]
rs2804214	0.92[CEU][hapmap]
rs2804244	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2804249	0.96[CEU][hapmap];0.85[TSI][hapmap]
rs2804251	0.83[EUR][1000 genomes]
rs2901056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858323	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4400711	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap]
rs4612715	0.91[CEU][hapmap]
rs4644580	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6585333	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap]
rs6585346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7068521	0.92[CEU][hapmap]
rs7071124	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7083621	0.96[CEU][hapmap]
rs7093703	0.87[CEU][hapmap]
rs7095798	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs7911480	0.92[CEU][hapmap]
rs7913311	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7922670	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap]
rs9420197	0.92[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7089599	ATRNL1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117418000-117420200	Enhancers	HSMMtube	muscle
2	chr10:117419400-117421000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
3	chr10:117419800-117421200	Active TSS	HSMM	muscle

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