Variant report

Variant	rs11197286
Chromosome Location	chr10:117303444-117303445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10509991	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10885699	0.82[TSI][hapmap]
rs10885721	0.85[TSI][hapmap]
rs10885722	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885725	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap]
rs10885729	0.96[CEU][hapmap]
rs10885730	0.96[CEU][hapmap]
rs10885738	0.83[EUR][1000 genomes]
rs10885746	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10885747	0.84[EUR][1000 genomes]
rs11197189	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11197231	1.00[CHB][hapmap]
rs11197233	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197244	0.84[ASN][1000 genomes]
rs11197246	0.86[CEU][hapmap];0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs11197247	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs11197249	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197252	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197255	0.83[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs11197258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap]
rs11197261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11197269	0.96[CEU][hapmap]
rs11197282	0.96[CEU][hapmap]
rs11197293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197294	0.83[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11197299	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs11197301	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11197320	0.85[TSI][hapmap]
rs11197337	0.83[TSI][hapmap]
rs11197357	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197369	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs11492805	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11812371	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12356944	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12765024	0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs12766723	0.84[ASN][1000 genomes]
rs12767028	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.81[ASN][1000 genomes]
rs12781537	0.84[ASN][1000 genomes]
rs1328008	0.82[EUR][1000 genomes]
rs1336116	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1336117	0.82[EUR][1000 genomes]
rs1410305	0.83[EUR][1000 genomes]
rs1410306	0.83[EUR][1000 genomes]
rs1572401	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs1576148	0.82[EUR][1000 genomes]
rs1576149	0.82[EUR][1000 genomes]
rs1590733	0.83[TSI][hapmap]
rs1590734	0.83[TSI][hapmap]
rs1590736	0.83[TSI][hapmap]
rs17724227	0.96[CEU][hapmap];0.84[TSI][hapmap]
rs17802381	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17802400	0.87[TSI][hapmap]
rs1854243	0.82[EUR][1000 genomes]
rs1854244	0.82[EUR][1000 genomes]
rs1981663	0.82[CHB][hapmap]
rs2068463	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs2149112	0.83[EUR][1000 genomes]
rs2250483	0.82[EUR][1000 genomes]
rs2250761	0.82[EUR][1000 genomes]
rs2420083	0.84[ASN][1000 genomes]
rs2420091	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2532729	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2769371	0.82[EUR][1000 genomes]
rs2769375	0.82[EUR][1000 genomes]
rs2769378	0.80[TSI][hapmap]
rs2769398	0.85[TSI][hapmap]
rs2769403	0.83[TSI][hapmap]
rs2769419	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs2784811	0.82[EUR][1000 genomes]
rs2784812	0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs2804184	0.81[EUR][1000 genomes]
rs2804186	0.82[EUR][1000 genomes]
rs2804187	0.82[EUR][1000 genomes]
rs2804190	0.82[EUR][1000 genomes]
rs2804192	0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs2804204	0.85[TSI][hapmap]
rs2804207	0.83[TSI][hapmap]
rs2804244	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28414370	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2901056	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35485324	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35594709	0.84[ASN][1000 genomes]
rs3858323	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs4400711	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap]
rs4644580	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6585333	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap]
rs6585346	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7071124	0.86[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7089599	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs7095798	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs7894126	0.83[EUR][1000 genomes]
rs7913311	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7922670	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap]
rs9420197	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11197286	ATRNL1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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